Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0107
         (581 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13360| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)               27   8.5  
SB_5445| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.5  

>SB_13360| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
          Length = 480

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 466 RIIQDQLAKSVQPFSSFSETNEQQFIFIYIDRNTN 570
           R +Q  ++ +VQ FS   E+N +  +F+Y+ +  N
Sbjct: 95  RAVQVNISMAVQSFSQIKESNMEFEVFMYLRQEWN 129


>SB_5445| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 191

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 551 YIKMNCCSLVSLKLENGWTDFANWS*IIRGNPEKV 447
           Y+  +CC  V++  ENGWT     S +     EKV
Sbjct: 106 YVTASCCISVTMS-ENGWTKTPQMSLLYIAKEEKV 139


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,815,594
Number of Sequences: 59808
Number of extensions: 269023
Number of successful extensions: 547
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)