Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0107
         (581 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   1.7  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              22   5.1  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   5.1  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    21   6.7  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   6.7  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   8.9  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   8.9  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   8.9  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 153 KMIPVITHDKLNFIVNQKLSLKY 221
           K+IP +  DKL+ I   KL+ +Y
Sbjct: 278 KIIPTLPSDKLSKIQTLKLATRY 300


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +1

Query: 13 IREIKTQLHTE 45
          I E+KT+LHTE
Sbjct: 19 IEELKTRLHTE 29


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -3

Query: 309 IEALRSLPGQLVP 271
           +E L+S PG+LVP
Sbjct: 48  VEELKSKPGKLVP 60


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 284 PGRLRSASIDK*KTFV*NKLKTNKRNPSDGG 376
           PG   + + +  KT   N + TN  + SDGG
Sbjct: 71  PGTSSATNPNAMKTIFKNTIFTNVASTSDGG 101


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 137 KLQMSRRNYCCH*KVF*KKITYNIRKIRQI 48
           K+  S  N   H   + KK+ YNI  I QI
Sbjct: 313 KIISSLSNNTIHNNNYNKKLYYNIINIEQI 342


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 569 FVFLSIYIKMNCCSLVSLKLENGWTD 492
           F +  I I + CC LV +   + W D
Sbjct: 241 FSYYLIQIYIPCCMLVIVSWVSFWLD 266


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 569 FVFLSIYIKMNCCSLVSLKLENGWTD 492
           F +  I I + CC LV +   + W D
Sbjct: 241 FSYYLIQIYIPCCMLVIVSWVSFWLD 266


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 425 FHIYLPFKPSLDFHE 469
           F  +LP  P+LD+H+
Sbjct: 316 FDEFLPPPPNLDYHD 330


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,596
Number of Sequences: 438
Number of extensions: 3115
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)