Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0106
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    40   4e-04
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    32   0.055
SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb...    29   0.68 
SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch...    29   0.68 
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    28   0.89 
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    28   1.2  
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    28   1.2  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    27   2.1  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   3.6  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    25   8.3  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = -2

Query: 121 LSPFSPVIPGKPTSPGWPGAPSIPGTPGRPGSPEMPKLP 5
           ++P  P +P  P +P  P APS+P  P  P +PE+P +P
Sbjct: 582 VAPEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEVPSVP 620



 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -2

Query: 121 LSPFSPVIPGKPTSPGWPGAPSIPGTPGRPGSPEMPKLP 5
           ++P  P +P +P  P  P APS+P  P  P  PE+P +P
Sbjct: 612 VAPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVP 650



 Score = 38.7 bits (86), Expect = 6e-04
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -2

Query: 115 PFSPVIPGKPTSPGWPGAPSIPGTPGRPGSPEMPKLP 5
           P  P +P +P  P  P APS+P  P  P  PE+P +P
Sbjct: 644 PEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVP 680



 Score = 35.9 bits (79), Expect = 0.004
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -2

Query: 118 SPFSPVIPGKPTSPGWPGAPSIPGTPGRPGSPEMPKLP 5
           S  +P +P  P +P  P APS+   P  P +PE+P  P
Sbjct: 508 SVITPSVPQPPAAPVVPEAPSVHQPPAAPVAPEVPSAP 545



 Score = 35.9 bits (79), Expect = 0.004
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -2

Query: 115 PFSPVIPGKPTSPGWPGAPSIPGTPGRPGSPEMPKLP 5
           P +P +P +P  P  P A S+P  P  P +PE+P +P
Sbjct: 554 PEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVP 590



 Score = 34.7 bits (76), Expect = 0.010
 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = -2

Query: 565 P*SPFCPGAPGNPGLPCFP*VPGKPFSPFIVK-PGRPVGPIGPVSPFSPIRPVKP 404
           P  P  P AP  P  P     P  P +P +   P RP  P+ P +P  P RP  P
Sbjct: 512 PSVPQPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPEAPSVPQRPAVP 566


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 32.3 bits (70), Expect = 0.055
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = -2

Query: 118 SPFSPVIPGKPTSPGWPGAPSIPGTPGRPGSPEMPKL 8
           +PF P  P  P  PG PGA + PG PG   + E   L
Sbjct: 537 APF-PGYPAVPAMPGIPGATAPPGAPGSYNTSESSNL 572



 Score = 30.7 bits (66), Expect = 0.17
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
 Frame = -2

Query: 103 VIPGKPTSPG----WPGAPSIPGTPGRPGSPEMPKLP 5
           V PG    PG    +PG P++P  PG PG+   P  P
Sbjct: 525 VPPGMALPPGMPAPFPGYPAVPAMPGIPGATAPPGAP 561



 Score = 28.3 bits (60), Expect = 0.89
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 30  PGRPGVPGIDGAPGQPGDVGLPG 98
           PG P VP + G PG     G PG
Sbjct: 540 PGYPAVPAMPGIPGATAPPGAPG 562



 Score = 27.9 bits (59), Expect = 1.2
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +3

Query: 15  GISGEPGRPGVPGIDGAPGQPG 80
           G    P  PG+PG    PG PG
Sbjct: 541 GYPAVPAMPGIPGATAPPGAPG 562



 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -2

Query: 118 SPFSP--VIPGKPTSPGWPGAPSIPGTPGRPGSPEM 17
           +PF P    P  PT+   PG P +P  PG PG P +
Sbjct: 483 APFIPGTSAPLPPTTFAPPGVP-LPPIPGAPGMPNL 517



 Score = 27.5 bits (58), Expect = 1.6
 Identities = 25/70 (35%), Positives = 27/70 (38%), Gaps = 7/70 (10%)
 Frame = -2

Query: 592 PNCPGSPGRP*SPFCPGAPGNPGL-----PCFP*VPGKPFSPFIVK--PGRPVGPIGPVS 434
           P     PG P  P  PGAPG P L     P  P  PG    P +    PG P  P  P  
Sbjct: 495 PTTFAPPGVPLPPI-PGAPGMPNLNMSQPPMVP--PGMALPPGMPAPFPGYPAVPAMPGI 551

Query: 433 PFSPIRPVKP 404
           P +   P  P
Sbjct: 552 PGATAPPGAP 561



 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +3

Query: 39  PGVPGIDGAPGQPGDVGLPGITG 107
           PG P +   PG PG    PG  G
Sbjct: 540 PGYPAVPAMPGIPGATAPPGAPG 562



 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 24  GEPGRPGVPGIDGAPGQPGDVG 89
           G P  P +PGI GA   PG  G
Sbjct: 541 GYPAVPAMPGIPGATAPPGAPG 562


>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +1

Query: 172 IVVNLGQKVQ*DQ*GIEVLKETRDCQAYP*ILKVTKEKWVQAVFLVNQVKR 324
           +  N+G   Q  Q  I  +++      YP +L   +EKW Q +F  + V+R
Sbjct: 72  VYANIGNPQQMGQSPITFVRQVLSLCQYPTLLDHAEEKWFQNLFPTDVVQR 122


>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 382

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = +3

Query: 198 PIGPIGYRGPKGDTGLPG--VSIDIKGDKGEVGPSGIPGEPGQKGDR 332
           P G     GP+GD GL G  + +D  G  G  G     G+   K DR
Sbjct: 233 PSGRFVVGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYSKVDR 279


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 443 SYRSYRPTRLNYKRRKRLTRNSWKTW 520
           S+R    T+ NY    RL   SW+TW
Sbjct: 314 SWREITKTKANYDNGIRLENASWRTW 339


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 121 LSPFSPVIPGKPTSPGWPGAPSIPGTPGR-PGSPEMPKL 8
           LS ++ VI    T+P  P + S+ G PG  PG   +P +
Sbjct: 513 LSEYTSVIQASLTAPSQPASLSLLGPPGNTPGHRNVPPI 551


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 109 SPVIPGKPTSPGWPGAPSIPGTPGRPGSPEMPKLP 5
           +P++P  P  PG   A   P     PG+P MP +P
Sbjct: 286 APLVP--PPPPGMVMASPSPAAATIPGAPVMPNIP 318



 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -2

Query: 121 LSPFSPVIPG-KPTSPGWPGAPSIPGTPGRPGSPEMPKLPL 2
           ++P S + PG  P +P    A + P T      P +P +PL
Sbjct: 204 VTPQSTLPPGFSPATPAPTSAANTPATIAATSIPPVPNVPL 244


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +1

Query: 481  KEKKAYQELMENMGGQDYLVLQDKKAI-KVY 570
            K+KK Y++  EN+G  D L + D + I +VY
Sbjct: 1271 KQKKYYEQYKENLGFFDSLCIGDNECITRVY 1301


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 19/67 (28%), Positives = 24/67 (35%), Gaps = 4/67 (5%)
 Frame = -2

Query: 592  PNCPGSPGRP*SPFCPGAPGNPGLPCFP*VPG----KPFSPFIVKPGRPVGPIGPVSPFS 425
            P  PG+P        P AP +   P  P  PG     P       P  PV  + P  P  
Sbjct: 1433 PTNPGAPSNHAPQVVPPAPMHAVAPVQPKAPGMVTNAPAPSSAPAPPAPVSQLPPAVPNV 1492

Query: 424  PIRPVKP 404
            P+  + P
Sbjct: 1493 PVPSMIP 1499


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = -2

Query: 106  PVIPGKPTSPGWPGAPSI-PGTPGRPGS 26
            P+ P KPT P    AP + P  P R GS
Sbjct: 1000 PIKPNKPTKPDHLVAPRVKPLLPPRSGS 1027


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,054,426
Number of Sequences: 5004
Number of extensions: 35859
Number of successful extensions: 154
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)