Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0105
         (615 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0WWS3 Cluster: Putative uncharacterized protein; n=1; ...    35   1.8  
UniRef50_UPI0000D5755E Cluster: PREDICTED: similar to ribosomal ...    33   7.1  

>UniRef50_Q0WWS3 Cluster: Putative uncharacterized protein; n=1;
          Arabidopsis thaliana|Rep: Putative uncharacterized
          protein - Arabidopsis thaliana (Mouse-ear cress)
          Length = 80

 Score = 34.7 bits (76), Expect = 1.8
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = +1

Query: 19 MKNAVNCAS*CELQDTFEHRHFERTLR 99
          MKN   C + CELQ+   HR FER LR
Sbjct: 1  MKNVAKCDTWCELQNPVNHRVFERKLR 27


>UniRef50_UPI0000D5755E Cluster: PREDICTED: similar to ribosomal
            protein S6 kinase, 90kDa, polypeptide 5 isoform a; n=2;
            Endopterygota|Rep: PREDICTED: similar to ribosomal
            protein S6 kinase, 90kDa, polypeptide 5 isoform a -
            Tribolium castaneum
          Length = 928

 Score = 32.7 bits (71), Expect = 7.1
 Identities = 22/76 (28%), Positives = 40/76 (52%)
 Frame = -2

Query: 488  SSILNND*YNVNNRITKPRRQKFIYTRTRYAHAKHNARAREVRRDYENFEITIKHF*IRR 309
            S I+ +D  +V+ ++   +RQK +Y +TR++      + +E+  D     + +KH   R+
Sbjct: 840  SGIVMSDKNSVDTKVVGRKRQKKVYVQTRWSERIRRRQRQEIDLD----PVPVKHNRKRK 895

Query: 308  RDELAKRDS*S*SSVR 261
             DE    +S S SS R
Sbjct: 896  VDERESIESTSSSSKR 911


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 539,451,463
Number of Sequences: 1657284
Number of extensions: 9474131
Number of successful extensions: 20898
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20896
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 44392209541
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)