Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0104
(646 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 31 1.0
11_07_0014 + 27379941-27379974,27381975-27382033,27382561-273827... 29 2.4
09_02_0267 - 6485428-6485895,6488255-6488303,6488466-6488469,648... 29 2.4
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581 29 2.4
03_05_0183 - 21681673-21682524 29 3.2
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157... 29 3.2
01_05_0118 + 18335065-18335553 29 3.2
07_03_1086 + 23858419-23859423,23859527-23859610 29 4.2
07_03_0626 + 20060013-20060273,20061017-20061274 27 9.7
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56... 27 9.7
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +1
Query: 454 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 588
A+ A +GK + E E S+QCD T + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>11_07_0014 +
27379941-27379974,27381975-27382033,27382561-27382782,
27383727-27383810,27385054-27385131,27385716-27385832,
27385956-27386019,27386399-27386402,27386565-27386613,
27388973-27389440
Length = 392
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = -3
Query: 617 KKKPIASISRDPNGLRRRVSRFE-CETRLVKSHCLEPPDSRGSTVSISLPDSARLASAL 444
KKKP ++ S+ N R+RV+ FE +R + L S +T +LPD+ L + L
Sbjct: 257 KKKPTSTPSQKRNNKRKRVTAFERLWSRAGELRILRAMASHTNTHRSTLPDTCDLFATL 315
>09_02_0267 -
6485428-6485895,6488255-6488303,6488466-6488469,
6488849-6488912,6489036-6489152,6489737-6489814,
6491058-6491141,6492086-6492307,6492835-6492893,
6494894-6494927
Length = 392
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = -3
Query: 617 KKKPIASISRDPNGLRRRVSRFE-CETRLVKSHCLEPPDSRGSTVSISLPDSARLASAL 444
KKKP ++ S+ N R+RV+ FE +R + L S +T +LPD+ L + L
Sbjct: 257 KKKPTSTPSQKRNNKRKRVTAFERLWSRAGELRILRAMASHTNTHRSTLPDTCDLFATL 315
>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
Length = 311
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +1
Query: 367 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 465
G LV L R GG SAG+C S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236
>03_05_0183 - 21681673-21682524
Length = 283
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 155 SQAFIATLLFDPSMSALPIIAKQNSPS 235
SQAF A LL D + +A+P++ Q P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255
>01_07_0197 +
41912207-41912652,41913226-41913800,41913828-41915748,
41915836-41916049,41916143-41916394,41916469-41916528,
41916646-41916776,41916898-41917012,41917084-41917239
Length = 1289
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +1
Query: 94 YKEFLARG-ARKVTTGITGLWQPSVHSDVAF*SFDVG 201
YK F A G RKV GIT + PS+ D+AF S +G
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFDSAALG 669
>01_05_0118 + 18335065-18335553
Length = 162
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 463 AESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGSRE 594
A+ G + V P +GG+++ + ++ K T RR+ FG+RE
Sbjct: 18 AQDGHRLPDVAPA-AGGTREPEHARLIARRKESTYRRTAFGNRE 60
>07_03_1086 + 23858419-23859423,23859527-23859610
Length = 362
Score = 28.7 bits (61), Expect = 4.2
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Frame = +1
Query: 307 LLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA-----SKAEASLAES 471
LL CD N A + LVHAL AA A +A L A AS+ +
Sbjct: 129 LLNLSICDENKAIIVEAGAIRPLVHALKSAASPAARENAACALLRLSQLDGSAAASIGRA 188
Query: 472 GKDMLTVEPRESGGSK 519
G L V E+GG++
Sbjct: 189 GAIPLLVSLLETGGAR 204
>07_03_0626 + 20060013-20060273,20061017-20061274
Length = 172
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -1
Query: 466 RLGWLRP*RRSGIIP 422
RLGWLRP R S ++P
Sbjct: 32 RLGWLRPSRLSAVVP 46
>02_01_0083 -
566201-567127,567223-567464,567623-567880,568173-568298,
568420-568489
Length = 540
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 473 ARICSLWSPESREALNNVTLLVAFRIQNARRDVEA 577
AR C W PESR ++ V ++A ++R+ A
Sbjct: 449 ARECLQWEPESRPTMSEVVQILATIAPSSRKHAAA 483
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,808,371
Number of Sequences: 37544
Number of extensions: 375326
Number of successful extensions: 984
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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