Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0103
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo...    27   2.9  
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    26   6.6  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   8.7  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    25   8.7  

>SPBC56F2.11 |met6||homoserine
           O-acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 489

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 18/53 (33%), Positives = 20/53 (37%)
 Frame = +3

Query: 267 RGRVVFERRNDVTFPLG*RHEAAMQATGPHAGGRRSVTFH*STARARAERPCR 425
           R +  FERR   T P   RH    +   P          H    R R ERPCR
Sbjct: 239 RSKCSFERRFARTVPDASRHPYPDRLPTPLTPSNAHWVVHNEGNRNRRERPCR 291


>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 302 DVITTFKNNTTSIQWEMRGRIVVGSF 225
           DVI+TF N    + W+ R  IV  S+
Sbjct: 467 DVISTFANMAQDLSWKPRRTIVFASW 492


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 85   KRNTLFCVHCALYDAY 132
            K   LFC+H  LYDA+
Sbjct: 1441 KNYVLFCIHHVLYDAW 1456


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/53 (22%), Positives = 23/53 (43%)
 Frame = +3

Query: 129 IPCVVQSR*KHILEXXXXXXXXXXXXXXKFYSERPNHDPPSHFPLDRGRVVFE 287
           +PC+ Q +  ++ E               F+SE P   PP+ +  D G  +++
Sbjct: 753 VPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFSELPITFPPT-YKFDIGTDIYD 804


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,847,770
Number of Sequences: 5004
Number of extensions: 54839
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)