Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0103
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19001| Best HMM Match : MBOAT (HMM E-Value=2.2)                     34   0.11 
SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)                    32   0.57 
SB_43202| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_36072| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_36681| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_36275| Best HMM Match : Extensin_2 (HMM E-Value=0.062)              29   5.3  

>SB_19001| Best HMM Match : MBOAT (HMM E-Value=2.2)
          Length = 596

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +2

Query: 104 VYTARCTTHTLCRTIPLKAHS*IKPTSHYYYGEAFMKILFRTTQPRSALSF-PT 262
           ++  R    TL  T P   +  + PTS Y+   A++KIL+R   PRS  SF PT
Sbjct: 333 LHLLRLPQSTLSFT-PTSEYFIVTPTSEYFIFYAYLKILYRLRLPRSTSSFTPT 385



 Score = 33.1 bits (72), Expect = 0.25
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +2

Query: 170 IKPTSHYYYGEAFMKILFRTTQPRSALSF-PT 262
           + PTS Y+   A++KIL+R   PRS  SF PT
Sbjct: 195 LTPTSEYFIFYAYLKILYRLRLPRSTSSFTPT 226



 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 176 PTSHYYYGEAFMKILFRTTQPRSALSF-PT 262
           PTS Y+    ++ +L R   PRS LSF PT
Sbjct: 291 PTSKYFIVYVYLGLLHRLRLPRSTLSFTPT 320


>SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)
          Length = 2128

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -1

Query: 375  QSGDRRRAGRSPAWRLRDVTLEGR*RHYDVQKQHDLDPVGNERADR 238
            + G R   G     R RD +  GR R YD ++ HD+ P G+ R DR
Sbjct: 1700 RGGPRDERGPRRDERPRDDSDRGR-RDYDPRRPHDIRPDGDRRGDR 1744


>SB_43202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 180

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 22/69 (31%), Positives = 31/69 (44%)
 Frame = -3

Query: 475 PCQIFNRNKYTKSLCTRRHGRSARARAVD*WNVTERRPPACGPVACMAAS*RHPRGKVTS 296
           P +  N  K+T SL  RR GR+     +   ++T RRP        +      PRG V +
Sbjct: 75  PGRTLNHEKFTTSLTPRRPGRTLNHEKLT-TSLTPRRPGRTLNHEKLTTP-LTPRGPVRT 132

Query: 295 LRRSKTTRP 269
           L+  K T P
Sbjct: 133 LKHDKLTTP 141


>SB_36072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 498

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 28  TRTGHRRSDLLHTDNTTRTKRNTLFCVHCALYDAYLVSYN 147
           TR  H     LH  +TTR   NTL  +H A +     ++N
Sbjct: 380 TRYSHYTLLTLHATHTTRYSHNTLLTLHAATHTTRYTTHN 419


>SB_36681| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1081

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = -1

Query: 540  SCRFGWRGSSA--PVVAKTPINIFRVKYSIVTNIQNRYVQGDTGAQLGLAPSTNGMSQSG 367
            +C F  R S+   PV+A+ P   F V  S V +I NR  Q   G +  +  +TN  SQ+G
Sbjct: 851  NCVFSIRNSACVLPVIARFPG--FPVMSSNVVSI-NRKQQTVAGLRFDVLANTNSWSQTG 907

Query: 366  DRRR 355
              R+
Sbjct: 908  AHRK 911


>SB_36275| Best HMM Match : Extensin_2 (HMM E-Value=0.062)
          Length = 406

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +2

Query: 56  YSTLTTQHAQNATPCFVYTARCTTHTLCRTIPLKAHS*IKPTSHYYY 196
           YS  T +H   + P + + +  ++H     +PL  H+ I PT H  Y
Sbjct: 306 YSYPTYKHPSYSYPSYKHPSYPSSHIQASLLPLIPHTSIPPTPHPTY 352


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,523,320
Number of Sequences: 59808
Number of extensions: 468226
Number of successful extensions: 966
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)