Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0103
         (750 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK126750-1|BAC86671.1|  644|Homo sapiens protein ( Homo sapiens ...    32   2.5  
AB113647-1|BAD26751.1| 1475|Homo sapiens RGD, leucine-rich repea...    32   2.5  
BC007408-1|AAH07408.1|  770|Homo sapiens low density lipoprotein...    30   7.7  
AK092355-1|BAC03868.1|  752|Homo sapiens protein ( Homo sapiens ...    30   7.7  
AB009462-1|BAA32330.1|  770|Homo sapiens LDL receptor related pr...    30   7.7  

>AK126750-1|BAC86671.1|  644|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44797 fis, clone BRACE3040644, highly  similar
           to Homo sapiens low density lipoprotein receptor-related
           protein 3 (LRP3). ).
          Length = 644

 Score = 31.9 bits (69), Expect = 2.5
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 347 RPARRRSPLCDIPLVDGASPS*APVSPCT 433
           RP  +   +C  PLVDG +P+ AP  PC+
Sbjct: 568 RPVDKDRKVCREPLVDGPAPADAPREPCS 596


>AB113647-1|BAD26751.1| 1475|Homo sapiens RGD, leucine-rich repeat,
            tropomodulin and proline-rich containing protein protein.
          Length = 1475

 Score = 31.9 bits (69), Expect = 2.5
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +3

Query: 312  LG*RHEAAMQATGPHAGGRRSVTFH*STARARAERPCRL 428
            LG R+E       P + GRR+V+ H    +A AERP RL
Sbjct: 1380 LGPRNEDGQLRPRPLSAGRRAVSVHEDQLQAPAERPLRL 1418


>BC007408-1|AAH07408.1|  770|Homo sapiens low density lipoprotein
           receptor-related protein 3 protein.
          Length = 770

 Score = 30.3 bits (65), Expect = 7.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 347 RPARRRSPLCDIPLVDGASPS*APVSPCT 433
           RP  +   +C  PL DG +P+ AP  PC+
Sbjct: 694 RPVDKDRKVCREPLADGPAPADAPREPCS 722


>AK092355-1|BAC03868.1|  752|Homo sapiens protein ( Homo sapiens
           cDNA FLJ35036 fis, clone OCBBF2016690, weakly similar to
           ZINC FINGER PROTEIN CLONE 647. ).
          Length = 752

 Score = 30.3 bits (65), Expect = 7.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 674 KYQCVFT*SRFILYFVLRLHTGSLH 600
           +YQC+F    F+ Y++L+ H  S H
Sbjct: 492 RYQCIFCLETFMTYYILKNHQKSFH 516


>AB009462-1|BAA32330.1|  770|Homo sapiens LDL receptor related
           protein 105 protein.
          Length = 770

 Score = 30.3 bits (65), Expect = 7.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 347 RPARRRSPLCDIPLVDGASPS*APVSPCT 433
           RP  +   +C  PL DG +P+ AP  PC+
Sbjct: 694 RPVDKDRKVCREPLADGPAPADAPREPCS 722


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,734,167
Number of Sequences: 237096
Number of extensions: 2052856
Number of successful extensions: 3679
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3679
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)