Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0102
         (406 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...    27   1.5  
SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   2.6  
SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyce...    24   7.8  
SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr...    24   7.8  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    24   7.8  
SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   7.8  

>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 120 IPDCILQAVSFGQPVAWHHPMFPNLLSCRETGPSLGFLRP 239
           +P C    V   + VA  H     L+ C + GP++ FL P
Sbjct: 253 VPICKDDLVCLPKTVAKAHGNIAQLVVCTKVGPTIRFLDP 292


>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 231

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 177 PMFPNLLSCRETGPSLGFLRPNIDETIGNV*R 272
           P  P+ L      P LGFLRP ++  +  V R
Sbjct: 28  PELPSFLLAFPHAPPLGFLRPKLNSLVVQVKR 59


>SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 498

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 84  SFGNPEFGAVLYIPDCILQAVSFGQP 161
           S  +PE    LYIPDC++   S  +P
Sbjct: 338 SLQDPEPEFALYIPDCLIGRPSEKKP 363


>SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 180

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 186 ETSDDAMRLVDRMKQLARCNPVCIEQH 106
           E   DA+  +D  KQL+  N  CIEQH
Sbjct: 41  EEKFDAVIKLDE-KQLSEMNDWCIEQH 66


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +3

Query: 96  PEFGAVLYIPDCILQAVSFGQPVAWHHP-MFPNLLS 200
           P F   + +PD +     F  P + HHP   P+LLS
Sbjct: 57  PSFLPGVSVPDTLSVRSGFSIPSSSHHPSAVPSLLS 92


>SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 210

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 12/54 (22%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = -2

Query: 216 ALSLGMTTDSETSDDAMRLVDRMKQLARCNPV---CIEQHQILGFQNFFTHEPF 64
           ++SLG  +  + S + M+++   ++LAR   +   CI +  ++ F  F  +  +
Sbjct: 27  SISLGYLSKEKISQEEMQIIRATQKLARTKYMTLYCIPRAWLIPFHEFLNNRSY 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,827,067
Number of Sequences: 5004
Number of extensions: 37591
Number of successful extensions: 93
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)