Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0102
         (406 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1080 + 11241590-11241625,11241723-11242018,11242113-112422...    31   0.26 
04_04_0920 + 29429114-29430934                                         31   0.35 
12_01_0934 - 9273325-9273807,9273898-9274062,9274155-9274235,927...    29   1.4  
05_03_0333 - 12541946-12542029,12544231-12544278,12545053-125451...    27   4.3  
01_06_1397 - 37017468-37017561,37017763-37017836,37019128-370191...    27   4.3  
09_06_0244 + 21822811-21823246,21823337-21823468,21823949-218240...    26   9.9  
04_04_0939 - 29530242-29531087,29531406-29531597,29531690-295317...    26   9.9  
03_06_0345 - 33281126-33281783,33281872-33282063,33282175-332822...    26   9.9  

>12_01_1080 +
           11241590-11241625,11241723-11242018,11242113-11242269,
           11242381-11242449,11242551-11243480,11243868-11243906,
           11244414-11244478,11244663-11244768,11244850-11245050,
           11247001-11247201,11247756-11247779,11249425-11249586,
           11249676-11249915,11250267-11250479,11250618-11250968,
           11251041-11251193,11251649-11251858,11252049-11252267,
           11252365-11252482,11252879-11253828,11254023-11254220,
           11254294-11254553,11255316-11255505,11255817-11256169,
           11258278-11258386,11258466-11258615,11258748-11258844,
           11259315-11259415
          Length = 2065

 Score = 31.5 bits (68), Expect = 0.26
 Identities = 23/95 (24%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
 Frame = -2

Query: 366 RVFFS-TLAILNTYYISIFVTYASVMNAYVKLSSRHFQSFHRCLDGGNPERALSLGMTTD 190
           R+ FS  +AIL   Y+SI    A  +   ++   RH +SF+    GG+  +  S+ + T 
Sbjct: 545 RILFSGKMAILVLPYVSICAEKAEHLEQLLEPLGRHVRSFYGNQGGGSLPKDTSVAVCTI 604

Query: 189 SETSDDAMRLVDRMKQLARCNPVCIEQHQILGFQN 85
            + +    +L++   +L+    + I++  ++G Q+
Sbjct: 605 EKANSLVNKLLEE-GRLSELGIIVIDELHMVGDQH 638


>04_04_0920 + 29429114-29430934
          Length = 606

 Score = 31.1 bits (67), Expect = 0.35
 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
 Frame = -2

Query: 312 VTYASVMNAYVKL--SSRHFQSFHRCLDGGNPERALSLG----MTTDSETSDDAMRLVDR 151
           VTYASV+N Y +L  S R    F   +D G  +  ++ G    M      + DAMRL+  
Sbjct: 401 VTYASVINVYCQLGRSDRAESVFSEMIDRGFDKCVVAYGNMISMYGKISRASDAMRLLAV 460

Query: 150 MKQLARCNP 124
           MK+   C P
Sbjct: 461 MKKKG-CEP 468


>12_01_0934 -
           9273325-9273807,9273898-9274062,9274155-9274235,
           9274347-9274475,9274590-9274661,9274758-9274826,
           9275143-9275514,9275590-9275703,9275729-9275848
          Length = 534

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 312 VTYASVMNAYVKLSSRHFQSFHRCLDG 232
           ++Y  V +  VKL S+H ++  RC+DG
Sbjct: 193 ISYCPVCDCEVKLRSKHCKTCDRCVDG 219


>05_03_0333 -
           12541946-12542029,12544231-12544278,12545053-12545158,
           12546943-12547046,12547127-12547264,12547395-12547799
          Length = 294

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +1

Query: 124 RIASCKLFHSVNQSHGIIRCFRICCHAERQGPLWVSSVQ 240
           R+  C  F  +     + R F +CC  +   PL   SVQ
Sbjct: 4   RLQECAAFTILGDCMHLPREFEVCCSKQHHQPLGTQSVQ 42


>01_06_1397 -
           37017468-37017561,37017763-37017836,37019128-37019193,
           37019543-37019623,37019735-37019943,37020096-37020192,
           37020497-37020514,37020597-37020727,37021040-37021088,
           37021450-37021539,37021616-37021721,37021815-37021885,
           37021963-37022037,37022059-37022120,37022677-37022887,
           37023599-37024069,37024387-37024719
          Length = 745

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 95  PRIWCCSIHTGLHLAS 142
           P  WCCS+ +G++ AS
Sbjct: 135 PCFWCCSVRSGIYAAS 150


>09_06_0244 + 21822811-21823246,21823337-21823468,21823949-21824037,
            21824135-21824224,21825033-21825603,21826097-21826734,
            21826978-21827098,21827223-21827337,21828234-21829723,
            21829830-21829901,21830151-21830196,21830413-21830515,
            21830591-21830674,21831035-21831475,21831651-21831746,
            21831896-21832045,21832131-21832274,21832414-21832527,
            21832621-21832803,21832901-21832945,21833058-21833192
          Length = 1764

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +1

Query: 151  SVNQSHGIIRCFRICCHAERQGPLWVSSVQTSMKRLEMSRGQFN 282
            +V++ H    C   CC  E   PL ++ + TS      SRG  N
Sbjct: 1212 NVSRPHVKTDCQSPCCVLEEDEPLSLADMGTSQLSASRSRGSKN 1255


>04_04_0939 -
           29530242-29531087,29531406-29531597,29531690-29531770,
           29532300-29532428,29532579-29532650,29532761-29532829,
           29533809-29533891,29534101-29534203,29534289-29534402,
           29536230-29536274
          Length = 577

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -2

Query: 306 YASVMNAYVKLSSRHFQSFHRCLDG 232
           + ++ NA V+ +S+H +S  +C+DG
Sbjct: 108 FCTLCNAEVRKNSKHCRSCDKCVDG 132


>03_06_0345 -
           33281126-33281783,33281872-33282063,33282175-33282217,
           33282751-33282874,33282966-33283058,33284484-33284685,
           33284751-33284857,33285462-33285543,33285629-33285666,
           33285751-33285837,33286324-33286434,33286554-33286904
          Length = 695

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = -2

Query: 189 SETSDDAMRLVDRMKQLARCNPVCIEQHQILGFQNFFT 76
           S TS+D      R K+LA CNP       I GFQ   T
Sbjct: 551 SSTSEDEKE-PQRYKRLATCNPRGTNLRTIDGFQTCIT 587


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,082,484
Number of Sequences: 37544
Number of extensions: 240499
Number of successful extensions: 601
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)