Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0102
         (406 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1563| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   0.62 
SB_38212| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_42042| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.8  
SB_21250| Best HMM Match : Keratin_B2 (HMM E-Value=5.5)                27   5.8  
SB_10827| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.8  
SB_4571| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.7  

>SB_1563| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 30.3 bits (65), Expect = 0.62
 Identities = 21/78 (26%), Positives = 35/78 (44%)
 Frame = -2

Query: 348 LAILNTYYISIFVTYASVMNAYVKLSSRHFQSFHRCLDGGNPERALSLGMTTDSETSDDA 169
           LAIL TY + +F     + +   K  +R  +  +  ++      A S G   DSE  D+ 
Sbjct: 668 LAILFTYPLQLFPVTEIIESYLFKEYNRRKEEKYEAMNVAKDSVADS-GTEIDSEAGDET 726

Query: 168 MRLVDRMKQLARCNPVCI 115
           + LV ++ Q      VC+
Sbjct: 727 IELVPKVNQRRLIKKVCM 744


>SB_38212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1892

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = +1

Query: 190  ICCHAERQGPLWVSSVQTSMKRLEMSRGQFNI--SIHNRRISHKNTYIVSIQYSKC*KKN 363
            I CH  R       ++ +S  R++MSR    I  S+H   +  K+   VS +YS+  +K+
Sbjct: 1478 ITCHTLRTS----RAISSSSPRVKMSRLSQCILYSVHEPHLPLKSACRVSSEYSRNTRKD 1533

Query: 364  SRGGPVPNSPY 396
            S  G + +  Y
Sbjct: 1534 SSSGEISSYEY 1544


>SB_42042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 863

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 369 PRVFFSTLAILNTYYISIFVTYAS 298
           P VF+S LA+  T Y  ++VT+A+
Sbjct: 414 PGVFYSKLAVPETGYNDVYVTHAT 437


>SB_21250| Best HMM Match : Keratin_B2 (HMM E-Value=5.5)
          Length = 210

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 101 IWCCSIHTGLHLASCFIRSTSRMASSDVSESVVMPRDRALSG 226
           +WC  + +G+ + S  +RS   + SSDV   + +      SG
Sbjct: 136 VWCSDVRSGICVMSGDVRSDICVMSSDVRSGICVMSGDVRSG 177


>SB_10827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 18/44 (40%), Positives = 22/44 (50%)
 Frame = -2

Query: 246 RCLDGGNPERALSLGMTTDSETSDDAMRLVDRMKQLARCNPVCI 115
           RC  GGN     SL +  +S TS +  RL DR     RC P+ I
Sbjct: 74  RCFTGGNMVEGQSLSVDRESSTS-EPYRLSDR----DRCFPIGI 112


>SB_4571| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 737

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +3

Query: 129 CILQAVSFGQPVAWHHPMFPNLLSCRETGPSLGFLRPNIDET 254
           CI    S G      H +F  L++  E    +GF  P ID T
Sbjct: 335 CIYTRCSIGYLYPMFHRVFTLLVNASEMSDLIGFKTPKIDWT 376


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,690,580
Number of Sequences: 59808
Number of extensions: 278688
Number of successful extensions: 761
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)