Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0102
         (406 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    24   0.57 
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    23   1.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   2.3  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   3.0  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   3.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   3.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   4.0  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   5.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   5.3  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    20   9.3  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    20   9.3  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 24.2 bits (50), Expect = 0.57
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 332 VFSIASVEKKTRGGARYPIRP 394
           VFS   +E   R  +RYP+RP
Sbjct: 107 VFSRQDIETIIRRNSRYPLRP 127


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +1

Query: 118 TYRIASCKLFHSVNQSHGIIRCFRICC 198
           T+R++   L H++N    I+R  +  C
Sbjct: 11  TFRLSKVMLDHTINSKKTIMRILKEVC 37


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 168 WHHPMFPNLLSCRETGPSL 224
           W H  FPNL+   +  PS+
Sbjct: 862 WRHWKFPNLVEVLDEFPSV 880


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +1

Query: 229 SSVQTSMKRLEMSRGQFNISIHNRR 303
           S V+  +KRL+    Q+ I++H+ +
Sbjct: 504 SRVRAHLKRLDHQPYQYKIAVHSEQ 528


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 9/28 (32%), Positives = 11/28 (39%)
 Frame = -1

Query: 385 WVPGPPSSFFFNTCYTEYLLYKYFCDLC 302
           W  G P     N     + L K+F D C
Sbjct: 192 WKEGDPVQVVKNLHLPRFTLEKFFTDYC 219


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 9/28 (32%), Positives = 11/28 (39%)
 Frame = -1

Query: 385 WVPGPPSSFFFNTCYTEYLLYKYFCDLC 302
           W  G P     N     + L K+F D C
Sbjct: 192 WKEGDPVQVVKNLHLPRFTLEKFFTDYC 219


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 185 SESVVMPRDRALSGFPP 235
           SESVV+P D  L G  P
Sbjct: 48  SESVVIPGDIVLGGLFP 64


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 363 VFFSTLAILNTYYISIFVTY 304
           VF ++  +LN  Y  I+VTY
Sbjct: 475 VFPASFGLLNICYWVIYVTY 494


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +1

Query: 70  FMSEKVLETQNLV 108
           ++ EK+LE QN++
Sbjct: 778 YIDEKILENQNII 790


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 360 FFSTLAILNTYYISIFV 310
           F+   A L ++YI +FV
Sbjct: 201 FYQIYATLGSFYIPLFV 217


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +1

Query: 196 CHAERQGPLWVSSVQTSMKRLEMSRG 273
           C  ERQ  +W  + +   K+   S+G
Sbjct: 308 CLTERQIKIWFQNRRMKWKKENKSKG 333


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,838
Number of Sequences: 438
Number of extensions: 2639
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)