Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0100
         (823 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0373 - 17037945-17040641                                         30   2.6  
01_05_0547 + 23141299-23141322,23143027-23143230,23143345-23143731     29   5.9  
02_01_0451 - 3237849-3238061,3238142-3238268,3238418-3238656,323...    28   7.8  

>09_04_0373 - 17037945-17040641
          Length = 898

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 150 CTNVNLFSPIRVFKLMKIYNFCAIRTRLLLIFTTFN 43
           CT + +   IR   L+++  FCA  +R LL++   N
Sbjct: 582 CTEITIIGNIRHVNLVRLRGFCAEGSRRLLVYEYMN 617


>01_05_0547 + 23141299-23141322,23143027-23143230,23143345-23143731
          Length = 204

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
 Frame = -3

Query: 524 KYAQQCSAGLSKRGARSRLLNYTNNNVDCVNLTNKYIILT-T*IEPSKFCYTS--TLCRV 354
           K A++ S   +K     RL   TN++   ++L N+Y+ LT + I   KFC  S  T    
Sbjct: 34  KLAKKQSFKDNKSDFFKRLAKMTNDHFIPLDLNNQYVPLTNSKIVDEKFCLASQFTCSGA 93

Query: 353 RVLAYVRLFVEL 318
           R++ +  LF  L
Sbjct: 94  RLIGHDGLFTSL 105


>02_01_0451 -
           3237849-3238061,3238142-3238268,3238418-3238656,
           3238937-3239151,3239569-3240031,3240562-3240715,
           3241724-3241833,3242540-3242797,3242843-3242854,
           3243492-3243545,3244202-3244312,3244390-3244545,
           3244798-3245201,3245405-3245501,3246041-3246050,
           3246097-3246164,3246652-3246762,3246874-3247074,
           3247384-3247485,3247980-3248087,3248209-3248411,
           3248563-3248680,3248774-3248854,3248958-3249500,
           3249602-3249730
          Length = 1428

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -2

Query: 210 APVRAGPVAIATHATSLI-RHCTNVNLFSPIRVFKLMKIYNFC 85
           A   AG   +A +A +L  +HCT     +PI+     K  +FC
Sbjct: 409 AHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFC 451


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,496,623
Number of Sequences: 37544
Number of extensions: 287216
Number of successful extensions: 443
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)