Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0100
         (823 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35370.1 68418.m04204 lectin protein kinase family protein co...    30   2.1  
At3g46960.1 68416.m05099 DEAD/DEAH box helicase, putative simila...    28   6.5  

>At5g35370.1 68418.m04204 lectin protein kinase family protein
           contains Pfam domains, PF01453: Lectin (probable mannose
           binding) and PF00069: Protein kinase domain
          Length = 870

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 150 CTNVNLFSPIRVFKLMKIYNFCAIRTRLLLIFTTFN 43
           CT + +   IR   L+K+  FCA   +LLL++   N
Sbjct: 555 CTEIAIIGNIRHTNLVKLRGFCARGRQLLLVYEYMN 590


>At3g46960.1 68416.m05099 DEAD/DEAH box helicase, putative similar
           to SP|P35207 Antiviral protein SKI2 {Saccharomyces
           cerevisiae}; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain
          Length = 1347

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -2

Query: 210 APVRAGPVAIATHATSLI-RHCTNVNLFSPIRVFKLMKIYNFC 85
           A   AG   +A +A +L  +HCT     +PI+     K  +FC
Sbjct: 373 AHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFC 415


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,929,483
Number of Sequences: 28952
Number of extensions: 251211
Number of successful extensions: 406
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1882599200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)