Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0098
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|c...    27   1.8  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    27   2.3  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    26   5.4  
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    25   7.2  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    25   7.2  
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy...    25   7.2  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    25   9.5  

>SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 154

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 407 LPPWVVRSLPINAINNNNKKTRGGARYPIRP 499
           LP W +       +N+NN  T  G + P+ P
Sbjct: 26  LPCWKIHQSQCETVNDNNTTTFKGVKEPLNP 56


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/24 (58%), Positives = 15/24 (62%)
 Frame = +2

Query: 389  DVYGPRLPPWVVRSLPINAINNNN 460
            D   P LPP+V  S P NA NNNN
Sbjct: 1809 DSVSPPLPPFVAGSNP-NARNNNN 1831


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 86  ITNTIPIS*SNVCWPRPRTVSILGDNYQD 172
           +T  I +S S++  PRP+  S+L +NY +
Sbjct: 393 LTADIDLSKSSLATPRPKLSSLLYENYSN 421


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 529 RRFTTS*LGKPLALPQLNPPCRTSPLSPAGRN 624
           +R  T   G P + P  NP  R SP+  A R+
Sbjct: 334 KRNLTVRAGTPQSSPNFNPAMRRSPVGAASRS 365


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 191 KINTELHFNFTGGRTSCDSAREGTTTLPI 277
           K + +  FNF  G T C    EG TT+ I
Sbjct: 773 KDDNQQEFNFDTGITHCSMNDEGYTTISI 801


>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 735

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -2

Query: 306 RNAYYCFTAEIGRVVVPSRAESQDVLPPVKLKCSSVLIF 190
           +NA++    EI +  +PS  + +D+L   K      L F
Sbjct: 55  KNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAF 93


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 12  TTQNGMVTYWSNRDTCCFNCRTRFKLR 92
           T  NG+++Y+ N+D     CR    L+
Sbjct: 277 TLNNGVLSYYKNQDDASSACRGSINLK 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,800,802
Number of Sequences: 5004
Number of extensions: 56602
Number of successful extensions: 113
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)