Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0098
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0775 + 25069960-25070023,25070896-25071263                       29   2.4  
06_03_0420 + 20593468-20593719,20594534-20594581,20595155-20595970     29   3.2  
10_02_0192 + 6517985-6518348,6518647-6518699,6519984-6520021,652...    28   5.6  

>01_05_0775 + 25069960-25070023,25070896-25071263
          Length = 143

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = +2

Query: 482 RYPIRPIVSRITIHWPVVLQRRDWENPWRYPNLIPLAGHPPFRQLA 619
           R  +   VS +  HW      + W   WR P L+P A   P   LA
Sbjct: 29  RLKVWAFVSDVRGHWASASPAQSWSRGWRCP-LLPAAATSPAAHLA 73


>06_03_0420 + 20593468-20593719,20594534-20594581,20595155-20595970
          Length = 371

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 14/99 (14%)
 Frame = +2

Query: 350 NSYLRVGGGTCVVDVYGPRLPPWVVRSLPINAINNNNKK---------TRGGARYPIRPI 502
           +S++ +GG + +  V G  L PW +++LP+++   ++ K           G    P+ P 
Sbjct: 148 SSHITIGGNSLIGGVEGSSLIPW-LKTLPLSSSYASSSKFPQLHHLYFNGGSISAPVTPP 206

Query: 503 VSRITIHWPVVLQRRDWEN-----PWRYPNLIPLAGHPP 604
            S  T   P +  R DWEN     PW   N   L    P
Sbjct: 207 SSSPT-RTPRL--RTDWENASVQPPWASANYTSLPNSTP 242


>10_02_0192 +
           6517985-6518348,6518647-6518699,6519984-6520021,
           6522332-6522717,6523752-6523822,6524620-6524732,
           6525019-6525337,6525576-6525886,6526493-6527069,
           6530483-6530538,6531643-6532126
          Length = 923

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 154 QNAYSSRAWPAYVRLRDWNCVRNLKRVRQLK 62
           Q  Y+  +WP   RL  W C  + +R R L+
Sbjct: 6   QGCYAVSSWPRLPRLPPWPCASHAQRRRVLR 36


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,391,995
Number of Sequences: 37544
Number of extensions: 457850
Number of successful extensions: 1161
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)