Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0098
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125955-11|AAK71367.1|  178|Caenorhabditis elegans Hypothetical...    28   5.0  
U97405-11|AAB53004.1|  672|Caenorhabditis elegans Hypothetical p...    27   8.7  

>AF125955-11|AAK71367.1|  178|Caenorhabditis elegans Hypothetical
           protein F46E10.11 protein.
          Length = 178

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/40 (42%), Positives = 19/40 (47%)
 Frame = +2

Query: 323 SRYSYTEP*NSYLRVGGGTCVVDVYGPRLPPWVVRSLPIN 442
           S  SY +   S  R   G C V  Y P LPP   RS P+N
Sbjct: 71  STSSYCQQIRSNWRCINGCCRVPNYEPTLPPTTTRS-PVN 109


>U97405-11|AAB53004.1|  672|Caenorhabditis elegans Hypothetical
           protein T09B4.1 protein.
          Length = 672

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 353 SYLRVGGGTCVVDVYGPRLPPWVVRSLPINAIN 451
           +Y+RVG    +  V+G   PPWV  +L    +N
Sbjct: 222 NYVRVGVNNGMESVFGWTFPPWVTITLAAVFVN 254


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,108,529
Number of Sequences: 27780
Number of extensions: 349533
Number of successful extensions: 882
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)