Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0097
         (574 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...   206   1e-54
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    26   4.5  
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo...    26   4.5  
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    26   4.5  
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    25   7.9  
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom...    25   7.9  
SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr 2||...    25   7.9  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    25   7.9  

>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score =  206 bits (504), Expect = 1e-54
 Identities = 96/195 (49%), Positives = 133/195 (68%), Gaps = 5/195 (2%)
 Frame = +2

Query: 2   FIAFEEVLSLAVQCDVDLILLGGDLFDQAKPSVNCMFKCTEIIRKYCLGDKPVSIELLSD 181
           F++F E+L +A + DVD+ILLGGD+F   KPS   +++    +R  CLGDKP  +ELLSD
Sbjct: 42  FVSFNEILEIARERDVDMILLGGDIFHDNKPSRKALYQALRSLRLNCLGDKPCELELLSD 101

Query: 182 QIKNFSRT----VNYEDPNLNISYPILSIHGNHDDPVGQGSVSSLDILSITGLVNYFGKW 349
                  T    +NY DPN+N++ P+ SIHGNHDDP G G  S+LDIL +TGLVNYFG+ 
Sbjct: 102 TSLTTGDTAVCNINYLDPNINVAIPVFSIHGNHDDPSGDGRYSALDILQVTGLVNYFGRV 161

Query: 350 TDYTHVRISPVLLQKGLTRLALYGLSHLKDQRLSRLFAEKKVEMERPHETLD-WVNLFVL 526
            +  ++ +SP+LLQKG T+LALYG+S+++D+RL   F E KV+  RP    D W NL  +
Sbjct: 162 PENDNIVVSPILLQKGFTKLALYGISNVRDERLYHSFRENKVKFLRPDLYRDEWFNLLTV 221

Query: 527 HQNHADRGHSNYIPE 571
           HQNH+    ++Y+PE
Sbjct: 222 HQNHSAHTPTSYLPE 236


>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +2

Query: 188 KNFSRTVNYEDPNLNISYPILSIHGNHDDPVGQGSVSSL 304
           K ++  +N  D ++ I  P+L    N DD +G+  + +L
Sbjct: 110 KVYTSKINTIDTSIPIDDPLLREFSNRDDSIGEKMLKNL 148


>SPAC26H5.07c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 505

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = +2

Query: 332 NYFGKW--TDYTHVRISPVLL 388
           NYFG    TDY H+ ++P+LL
Sbjct: 168 NYFGNLDATDYPHLFLNPILL 188


>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 19/48 (39%), Positives = 23/48 (47%)
 Frame = -2

Query: 153 LSPRQYLRIISVHLNIQLTEGLA*SNRSPPKSIKSTSHCTARDKTSSK 10
           L P Q  R +S  +N  L    A S  S   S+KSTS  T  + TS K
Sbjct: 134 LKPEQNTRPVS-EVNASLDLNTA-SRSSSAHSVKSTSSATVTNVTSKK 179


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 81  SNRSPPKSIKSTSHCTARDKTSSKAI 4
           ++RSPP S K  S C +    SS+ +
Sbjct: 166 NHRSPPASCKRLSSCESSGSPSSRVV 191


>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 892

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +2

Query: 5   IAFEE-VLSLAVQCDVDLILLGGDL 76
           + FEE V S+   CD+D +L  GD+
Sbjct: 866 LPFEERVFSIHPNCDIDALLSNGDV 890


>SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
 Frame = +2

Query: 131 RKYCLGDKPVSIELLSDQIKNFSRTVNYEDPNLNISYPILSIHGNHDDPVGQGSVSSLDI 310
           RK    D+PV I+ L+ QIK    ++N +  +L        + GN + P      S   +
Sbjct: 70  RKTLFDDRPVEIQELTFQIKQSLSSLNSDIASLQ-----QVVKGNRNKPAQMNQHSENVV 124

Query: 311 LSI-TGLVNYFGKWTDYTHVR 370
           +S+   L N    + D   +R
Sbjct: 125 VSLQNSLANTSMTFKDILEIR 145


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 398 LTRLALYGLSHLKDQRLSRLFAEKKVEMERPHETLDWVNLFV 523
           LTR  LY  +H +D  +      +++++ +PH    W NLF+
Sbjct: 785 LTRRRLYRFNHRQDAAILLQHNLRQLKLLKPH---PWWNLFL 823


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,460,880
Number of Sequences: 5004
Number of extensions: 52206
Number of successful extensions: 128
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)