Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0097
(574 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1284 + 32376870-32376874,32376876-32376935,32377166-323773... 184 3e-47
08_01_0522 - 4545166-4545174,4545295-4545447,4545566-4545727,454... 171 3e-43
12_02_1149 - 26467252-26468319,26468452-26469147,26469263-264694... 29 3.5
02_01_0702 - 5243064-5243159,5243280-5243331,5243453-5243526,524... 29 3.5
09_01_0076 + 1105331-1105453,1106559-1106705,1107046-1107195,110... 28 4.6
02_05_1052 + 33770355-33773981,33774217-33774336,33774880-337749... 28 4.6
10_08_0845 - 20968051-20968188,20968769-20968843,20969399-209694... 28 6.1
12_02_0503 - 19756561-19757991,19758606-19759967 27 8.0
03_03_0266 - 16014740-16015045,16015566-16015601,16015623-160156... 27 8.0
>04_04_1284 +
32376870-32376874,32376876-32376935,32377166-32377301,
32377439-32377596,32377791-32377881,32377975-32378094,
32378166-32378234,32378354-32378445,32378578-32378680,
32378761-32378868,32378949-32379011,32379073-32379144,
32379322-32379399,32379478-32379540,32379617-32379680,
32379817-32379902,32380456-32380569,32380760-32380837,
32381068-32381303,32381486-32381576,32381706-32381894,
32382082-32382117
Length = 703
Score = 184 bits (449), Expect = 3e-47
Identities = 95/203 (46%), Positives = 128/203 (63%), Gaps = 13/203 (6%)
Frame = +2
Query: 2 FIAFEEVLSLAVQCDVDLILLGGDLFDQAKPSVNCMFKCTEIIRKYCLGDKPVSIELLSD 181
F AFEE+ SLA Q VD +LLGGDLF + KPS + + K EI+R+YCL D+PV +++SD
Sbjct: 53 FEAFEEICSLAEQNKVDFVLLGGDLFHENKPSRSTLVKTIEILRRYCLNDQPVKFQVVSD 112
Query: 182 QIKNFSR---TVNYEDPNLNISYPILSIHGNHDDPVGQGSVSSLDILSITGLVNYFGKW- 349
Q NF VNYEDPN N+ P+ +IHGNHDDP G ++S++DILS LVNYFGK
Sbjct: 113 QTINFPNRFGQVNYEDPNFNVGLPVFTIHGNHDDPAGVDNLSAIDILSACNLVNYFGKMD 172
Query: 350 ---TDYTHVRISPVLLQKGLTRLALYGLSHLKDQRLSRLF-AEKKVEMERPH-----ETL 502
+ + + PVL++KG T +ALYGL +++D+RL+R+F V+ RP
Sbjct: 173 LGGSGVGEIAVYPVLVKKGTTFVALYGLGNIRDERLNRMFQTPHAVQWMRPETQDGMSVS 232
Query: 503 DWVNLFVLHQNHADRGHSNYIPE 571
DW N+ VLHQN + I E
Sbjct: 233 DWFNILVLHQNRIKTNPKSAINE 255
>08_01_0522 -
4545166-4545174,4545295-4545447,4545566-4545727,
4545821-4545895,4545974-4546087,4546257-4546339,
4546496-4546556,4546664-4546726,4546804-4546908,
4547454-4547525,4547602-4547664,4547746-4547853,
4547937-4548039,4548131-4548207,4548335-4548403,
4548488-4548607,4548749-4548839,4549020-4549177,
4549696-4549834,4551164-4551186
Length = 615
Score = 171 bits (417), Expect = 3e-43
Identities = 87/198 (43%), Positives = 120/198 (60%), Gaps = 8/198 (4%)
Frame = +2
Query: 2 FIAFEEVLSLAVQCDVDLILLGGDLFDQAKPSVNCMFKCTEIIRKYCLGDKPVSIELLSD 181
F FEE+ SLAV VD ILLGG+LF + KPS++ + K EIIR YCL D V +++SD
Sbjct: 40 FDTFEEICSLAVINKVDFILLGGNLFHENKPSISTLVKSMEIIRSYCLNDHQVQFQVVSD 99
Query: 182 Q---IKNFSRTVNYEDPNLNISYPILSIHGNHDDPVGQGSVSSLDILSITGLVNYFGK-- 346
Q ++N VN+EDPN NI P+ ++HG HD P G +S+ DILS VNYFGK
Sbjct: 100 QAACLQNRFGRVNFEDPNFNIGLPVFTVHGTHDGPAGVDGLSATDILSACNFVNYFGKVD 159
Query: 347 --WTDYTHVRISPVLLQKGLTRLALYGLSHLKDQRLSRLF-AEKKVEMERPHETLDWVNL 517
+D + + PV ++KG T +ALYGL +++D++LSR+ K++ + DW NL
Sbjct: 160 PGSSDVDQISVCPVFIKKGATSVALYGLGNIRDEKLSRMLQTHYKIQWMKADSEDDWFNL 219
Query: 518 FVLHQNHADRGHSNYIPE 571
FV HQ +N I E
Sbjct: 220 FVFHQKRRKGSSTNGINE 237
>12_02_1149 -
26467252-26468319,26468452-26469147,26469263-26469409,
26470936-26471274
Length = 749
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 403 EARPLWT*PFKRSETFTSFC*KKSGNGETP*NIGLGQFICTTSK 534
EA W F+R ETFT+ +KSG P ++ F+ ++K
Sbjct: 74 EAAVAWEEEFERVETFTATSHRKSGAAFHPWDLAFSVFVNDSNK 117
>02_01_0702 -
5243064-5243159,5243280-5243331,5243453-5243526,
5243633-5243683,5243840-5243899,5244131-5244232,
5244416-5244502,5244759-5244803,5245241-5245283,
5245371-5245499,5245599-5245676,5245762-5245811,
5246026-5246108,5246780-5246843,5246953-5247066,
5247558-5247623,5247713-5247778,5248405-5248446,
5248590-5248652,5248744-5248794
Length = 471
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 125 IIRKYCLGDKPVSIELLSDQIKNFSRTVNYEDPN-LNISYPILSIHGNHD 271
+ R+ G K ++ + D NFS + ++DP L + ++IH +H+
Sbjct: 223 VYRRIFKGGKTIAADNALDYAANFSHMLGFDDPKMLELMRLYITIHTDHE 272
>09_01_0076 + 1105331-1105453,1106559-1106705,1107046-1107195,
1107272-1107531,1107897-1108084,1108187-1108311,
1108485-1108521,1108802-1108893,1109023-1109133,
1109242-1109352,1109576-1109669,1109833-1109945,
1110316-1110411,1110510-1110617,1110665-1110814,
1110910-1110990,1111205-1111276,1111553-1111646,
1111759-1111787,1111870-1111967,1112065-1112160,
1112399-1112620,1113002-1113158,1113472-1113627,
1113703-1113930
Length = 1045
Score = 28.3 bits (60), Expect = 4.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 441 RDFHVFLLKKKWKWRDPMK 497
R H +LL+ KWKW+ P K
Sbjct: 997 RSHHQWLLQFKWKWQKPWK 1015
>02_05_1052 +
33770355-33773981,33774217-33774336,33774880-33774996,
33775322-33775411,33775971-33776078,33776304-33776351
Length = 1369
Score = 28.3 bits (60), Expect = 4.6
Identities = 20/58 (34%), Positives = 28/58 (48%)
Frame = -2
Query: 180 SDSNSILTGLSPRQYLRIISVHLNIQLTEGLA*SNRSPPKSIKSTSHCTARDKTSSKA 7
S S++ L G+SPR+ L + NI TE +R+ P S+ S T R S A
Sbjct: 552 STSSASLRGMSPRRRLASDGISKNITFTEK---DDRTMPSSVASQEISTIRRLPSDGA 606
>10_08_0845 -
20968051-20968188,20968769-20968843,20969399-20969425,
20969512-20969649,20969765-20969880,20970000-20970081,
20970105-20970226,20970314-20970368
Length = 250
Score = 27.9 bits (59), Expect = 6.1
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = -2
Query: 321 VIERISRELTLPWPTGSS*LPCIERIG*EIFKLGSS*LTVLE 196
VIE + ++ P+GSS I +G FKLGS LT+L+
Sbjct: 133 VIEEMKLKVVYTVPSGSSDDSGITSLGSRSFKLGSDDLTMLK 174
>12_02_0503 - 19756561-19757991,19758606-19759967
Length = 930
Score = 27.5 bits (58), Expect = 8.0
Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 2/135 (1%)
Frame = +2
Query: 119 TEIIRKYCLGDKPVSIELLSDQIKNFSRTVNYEDPNLNISYPILSIHGN-H-DDPVGQGS 292
+ I RK+ + D + E L D +KN ++ +L YP HG H D
Sbjct: 106 SSISRKFHVADSSRATENLKDALKNLDAVLDNAGRSLPAIYPSSCSHGKAHIQDSASIQE 165
Query: 293 VSSLDILSITGLVNYFGKWTDYTHVRISPVLLQKGLTRLALYGLSHLKDQRLSRLFAEKK 472
V+ +I G + D+ V ++P + + L+ A+ G + L++ + K
Sbjct: 166 VTKELRTTIFGRLKEKDAIIDWLGV-LTPNIRDQKLSLCAIVGAGGMGKTTLAQFVCQDK 224
Query: 473 VEMERPHETLDWVNL 517
+ + W ++
Sbjct: 225 KVQDHFANKIIWADV 239
>03_03_0266 - 16014740-16015045,16015566-16015601,16015623-16015643,
16016331-16016591,16017504-16018985,16019834-16019989,
16020154-16020277,16020399-16020615,16020877-16021774,
16022947-16023291,16023371-16023565,16023751-16024453,
16024866-16025467
Length = 1781
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 558 LLCPLSA*F*CSTNKLTQSNVSWGLSISTF 469
L CP S F +T ++ S+ +WGLS+ F
Sbjct: 928 LKCPWSNGFPPATLRIVMSDAAWGLSLGKF 957
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,871,119
Number of Sequences: 37544
Number of extensions: 296758
Number of successful extensions: 673
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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