Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0097
         (574 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36848| Best HMM Match : No HMM Matches (HMM E-Value=.)             118   3e-27
SB_48167| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_17501| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27)                 29   3.6  
SB_29018| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_8941| Best HMM Match : VWA (HMM E-Value=0)                          28   6.2  
SB_1960| Best HMM Match : Transposase_21 (HMM E-Value=8.1e-05)         28   6.2  
SB_59755| Best HMM Match : SAM_PNT (HMM E-Value=2.8)                   27   8.2  

>SB_36848| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 608

 Score =  118 bits (285), Expect = 3e-27
 Identities = 78/191 (40%), Positives = 103/191 (53%), Gaps = 1/191 (0%)
 Frame = +2

Query: 2   FIAFEEVLSLAVQCDVDLILLGGDLFDQAKPSVNCMFKCTEIIRKYCLGDKPVSIELLSD 181
           F+ FEE L +A + +VD ILLGGDL+ + KPS   +     + RK+C+GD+   +E LSD
Sbjct: 34  FVTFEETLQIAKKRNVDFILLGGDLYHENKPSRRTLHASMALFRKFCMGDRVCEVEFLSD 93

Query: 182 QIKNFSRTVNYEDPNLNISYPILSIHGNHDDPVGQGSVSSLDILSITGLVNYFGKWTDYT 361
           Q  NF+          N  +P +    N++DP       S+ + SI G            
Sbjct: 94  QSINFA----------NNRFPWV----NYEDP---NLNVSIPVFSIHG-----------N 125

Query: 362 HVRISPVLLQKGLTRLALYGLSHLKDQRLSRLFAEKKVEMERPHETLD-WVNLFVLHQNH 538
           H    P    KG T+LALYGL  ++D+RL R F   KV+M RP E  D W N FVLHQN 
Sbjct: 126 HD--DPA--GKGATKLALYGLGSVRDERLHRTFVNNKVKMLRPKEDPDSWFNAFVLHQNR 181

Query: 539 ADRGHSNYIPE 571
           A  GH+NYIPE
Sbjct: 182 AKHGHTNYIPE 192


>SB_48167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 9/29 (31%), Positives = 22/29 (75%)
 Frame = +2

Query: 14  EEVLSLAVQCDVDLILLGGDLFDQAKPSV 100
           +++++  V+ +VD++++ GDL D  +PS+
Sbjct: 110 DKIVNKVVEAEVDIVVITGDLIDSGEPSL 138


>SB_17501| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 819

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = +2

Query: 77  FDQAKPSVNCMFKCTEIIRKYCLGD 151
           F QA    NC  KC E   K CLGD
Sbjct: 278 FSQAHCKFNCHRKCAEKAPKNCLGD 302


>SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27)
          Length = 1492

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = +2

Query: 2   FIAFEEVLSLAVQCDVDLILLGGDLFDQAKPSVNCMFKCTEIIRKYCLG 148
           F  F++ LS+     +D+ LL GD+  Q KP  +C+   TEI+R    G
Sbjct: 167 FRDFKKTLSVD-HPGLDIGLLTGDV--QIKPEASCLIMTTEILRNASTG 212


>SB_29018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1047

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +3

Query: 480 WRDPMKHWTGSI 515
           W+DP  HWTGSI
Sbjct: 656 WQDPSLHWTGSI 667


>SB_8941| Best HMM Match : VWA (HMM E-Value=0)
          Length = 2180

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = +2

Query: 152  KPVSIELLSDQIKNFSRTVNYEDPNLNISYPILSIHGNHDDPVGQGSVSSL 304
            K VS  L+S +I    RT+     N+   + +LS+  NHDDP+   S  SL
Sbjct: 1419 KRVSSTLISPEI----RTIIVSFGNME-KHELLSLAKNHDDPILSSSCKSL 1464


>SB_1960| Best HMM Match : Transposase_21 (HMM E-Value=8.1e-05)
          Length = 350

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 18/43 (41%), Positives = 21/43 (48%)
 Frame = -3

Query: 566 EYSYCVLCQHDFDVVQIN*PSPMFHGVSPFPLFFQQKDVKVSD 438
           EY YC   + DF  VQ   PSP    +  F L  +Q   KVSD
Sbjct: 298 EYEYCDDEEEDFTGVQPQRPSPESRALIMF-LMLRQTMYKVSD 339


>SB_59755| Best HMM Match : SAM_PNT (HMM E-Value=2.8)
          Length = 650

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 206 VNYEDPNLNISYPILSIHGNHDDPVGQGSVSSLDI 310
           + Y+ P  N+S P+ S+HG +  P G  +    DI
Sbjct: 237 IRYQPPANNLSVPVSSVHGENLTP-GSNTEGGKDI 270


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,743,790
Number of Sequences: 59808
Number of extensions: 363898
Number of successful extensions: 755
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)