Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0097
         (574 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    26   0.30 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    26   0.30 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   6.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   8.7  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   8.7  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 25.8 bits (54), Expect = 0.30
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
 Frame = +2

Query: 263 NHDDPVGQGSVSSLDILSITG-LVNYFGKWTDYTHVRISPVLLQK---GLTRLALYGLSH 430
           + D PV + S   L I+ + G LV Y   +           +LQ+   G++  A+YG   
Sbjct: 540 HRDTPVVRASGRELTIILLAGVLVCYLNTFLLLATPTTVTCILQRFGVGVSFSAVYGALL 599

Query: 431 LKDQRLSRLFAEKKVEMERP 490
            K  R++R+F        RP
Sbjct: 600 TKTNRIARIFDSASRTAVRP 619


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 25.8 bits (54), Expect = 0.30
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
 Frame = +2

Query: 263 NHDDPVGQGSVSSLDILSITG-LVNYFGKWTDYTHVRISPVLLQK---GLTRLALYGLSH 430
           + D PV + S   L I+ + G LV Y   +           +LQ+   G++  A+YG   
Sbjct: 630 HRDTPVVRASGRELTIILLAGVLVCYLNTFLLLATPTTVTCILQRFGVGVSFSAVYGALL 689

Query: 431 LKDQRLSRLFAEKKVEMERP 490
            K  R++R+F        RP
Sbjct: 690 TKTNRIARIFDSASRTAVRP 709


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = -1

Query: 286 LANGIIMIAVY*ENRVRNI 230
           L N ++++AVY  +++RN+
Sbjct: 81  LGNVLVILAVYHTSKLRNV 99


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 180 SDSNSILTGLSPRQYLRIIS 121
           S S+ ILT +SP  Y++ IS
Sbjct: 313 SGSSGILTPVSPYGYVKPIS 332


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +1

Query: 121 RNNPQILSWG*TG*YRVAV 177
           R+NPQIL++  +  Y++AV
Sbjct: 312 RDNPQILTYKYSKRYKMAV 330


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,255
Number of Sequences: 438
Number of extensions: 3607
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)