Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0097
         (574 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g54260.1 68418.m06759 DNA repair and meiosis protein (Mre11) ...   186   9e-48
At2g35140.1 68415.m04310 expressed protein ; expression supporte...    32   0.24 
At4g21680.1 68417.m03140 proton-dependent oligopeptide transport...    29   1.7  
At3g50240.1 68416.m05494 kinesin motor protein-related KINESIN-L...    28   3.8  
At1g55440.1 68414.m06341 DC1 domain-containing protein contains ...    28   5.1  
At1g54280.1 68414.m06188 haloacid dehalogenase-like hydrolase fa...    27   6.7  
At1g55620.2 68414.m06367 voltage-gated chloride channel family p...    27   8.9  

>At5g54260.1 68418.m06759 DNA repair and meiosis protein (Mre11)
           identical to DNA repair and meiosis protein (Mre11)
           GI:5524769 from [Arabidopsis thaliana]
          Length = 720

 Score =  186 bits (453), Expect = 9e-48
 Identities = 93/203 (45%), Positives = 128/203 (63%), Gaps = 13/203 (6%)
 Frame = +2

Query: 2   FIAFEEVLSLAVQCDVDLILLGGDLFDQAKPSVNCMFKCTEIIRKYCLGDKPVSIELLSD 181
           F AFEE+ S+A +  VD +LLGGDLF + KPS   + K  EI+R++CL DKPV  +++SD
Sbjct: 34  FKAFEEICSIAEEKQVDFLLLGGDLFHENKPSRTTLVKAIEILRRHCLNDKPVQFQVVSD 93

Query: 182 QIKNFSRT---VNYEDPNLNISYPILSIHGNHDDPVGQGSVSSLDILSITGLVNYFGKW- 349
           Q  NF      VNYEDP+ N+  P+ SIHGNHDDP G  ++S++DILS   LVNYFGK  
Sbjct: 94  QTVNFQNAFGQVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAIDILSACNLVNYFGKMV 153

Query: 350 ---TDYTHVRISPVLLQKGLTRLALYGLSHLKDQRLSRLF-AEKKVEMERPH-----ETL 502
              +    + + P+L++KG T +ALYGL +++D+RL+R+F     V+  RP      +  
Sbjct: 154 LGGSGVGQITLYPILMKKGSTTVALYGLGNIRDERLNRMFQTPHAVQWMRPEVQEGCDVS 213

Query: 503 DWVNLFVLHQNHADRGHSNYIPE 571
           DW N+ VLHQN       N I E
Sbjct: 214 DWFNILVLHQNRVKSNPKNAISE 236


>At2g35140.1 68415.m04310 expressed protein ; expression supported
           by MPSS
          Length = 879

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 20/48 (41%), Positives = 24/48 (50%)
 Frame = +2

Query: 416 YGLSHLKDQRLSRLFAEKKVEMERPHETLDWVNLFVLHQNHADRGHSN 559
           +GLS  + QRL +LF+ KKVE  R  ET     L        DRG  N
Sbjct: 133 FGLSKAQVQRLLKLFSMKKVERSRLRETAAPKPLRKSENTVGDRGFRN 180


>At4g21680.1 68417.m03140 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 589

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 290 SVSSLDILSITGLVNYFGKWTDYTHVRISPVLLQKGLTRLALYGL 424
           S+SS DILS+   +  + ++ D    R++     KGLT L   G+
Sbjct: 381 SMSSFDILSVAFFIFAYRRFLDPLFARLNKTERNKGLTELQRMGI 425


>At3g50240.1 68416.m05494 kinesin motor protein-related KINESIN-LIKE
            PROTEIN KIF4, Homo sapiens, EMBL:AF179308
          Length = 1051

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 441  RDFHVFLLKKKWKWRDPMK 497
            R  H +LL+ KWKW+ P K
Sbjct: 995  RSHHQWLLQFKWKWQKPWK 1013


>At1g55440.1 68414.m06341 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 653

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 545 CQHDFDVVQIN*PSPMFHGVSPFPLFF 465
           C+   DV   + P P+ HG  P  LFF
Sbjct: 444 CEFQIDVRCASLPDPLIHGCHPHDLFF 470


>At1g54280.1 68414.m06188 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1) from Homo
           sapiens [SP|O43520], Mus musculus [SP|P70704]; contains
           InterPro accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 1240

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +2

Query: 119 TEIIRKYCLGDKPVSIELLSDQIKNFSRTVNYEDPNLNI 235
           T +  K CL D  +++E   +  +NFS T+  EDPN N+
Sbjct: 202 TNLKVKRCL-DATLALEK-DESFQNFSGTIKCEDPNPNL 238


>At1g55620.2 68414.m06367 voltage-gated chloride channel family
           protein contains Pfam profiles PF00654: Voltage gated
           chloride channel, PF00571: CBS domain
          Length = 781

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 17/32 (53%), Positives = 20/32 (62%)
 Frame = -1

Query: 115 FKHTIDRRFSLIKQIPS*KYQINITLYRKRQN 20
           FKH IDRRFSL  +  S K   NI + R+R N
Sbjct: 53  FKH-IDRRFSLSGRRLSFKRMENIRVDRERHN 83


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,501,990
Number of Sequences: 28952
Number of extensions: 256663
Number of successful extensions: 605
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)