Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0090
         (680 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0)                      32   0.49 
SB_11518| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_58306| Best HMM Match : Sugar_tr (HMM E-Value=2.6e-05)              29   4.6  
SB_53740| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             28   8.0  

>SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0)
          Length = 1595

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 18/44 (40%), Positives = 22/44 (50%)
 Frame = -1

Query: 563 QHSSNEYSPPSSGMFSNFLAPGLGPLTADSALCSVSLIGFPATH 432
           QHS N+   PS G  S  +    G +TADS  CS+S    P  H
Sbjct: 515 QHSKNDNHSPSFGTSSAAICNLQGSITADSP-CSLSAPSLPLVH 557


>SB_11518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1144

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 507 GTRTGTPDGGQRPLQRLTHRFPGHALR 427
           G   G+P G  +PL+ + HR PG ++R
Sbjct: 893 GGGRGSPRGSPQPLENIYHRKPGQSIR 919


>SB_58306| Best HMM Match : Sugar_tr (HMM E-Value=2.6e-05)
          Length = 457

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 217 FLGML*TQVDCAPVTGTWSRTRCIWIS 297
           F+GML   + C  ++  W R +C++IS
Sbjct: 84  FVGMLIGSLVCGVISDAWGRKKCLFIS 110


>SB_53740| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 1980

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 384  QCWCSEMSVVRVSDNAVRGRETDE*DAAE 470
            QCWC +M+ + +  +  RG   D   AA+
Sbjct: 933  QCWCVDMNGIEIPGSVTRGHRPDCKKAAQ 961


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,457,684
Number of Sequences: 59808
Number of extensions: 490613
Number of successful extensions: 1443
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1438
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)