Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0090
         (680 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024853-4|AAK68586.1|  746|Caenorhabditis elegans Hypothetical ...    29   3.1  
U70853-1|AAB09143.2|  439|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>AC024853-4|AAK68586.1|  746|Caenorhabditis elegans Hypothetical
           protein Y71F9AR.3 protein.
          Length = 746

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/28 (53%), Positives = 16/28 (57%)
 Frame = -1

Query: 578 IPEFPQHSSNEYSPPSSGMFSNFLAPGL 495
           +P  P  S  E SPPSS  FSN  AP L
Sbjct: 190 LPSTP--SEREASPPSSSQFSNSAAPNL 215


>U70853-1|AAB09143.2|  439|Caenorhabditis elegans Hypothetical
           protein M01H9.2 protein.
          Length = 439

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = -1

Query: 575 PEFPQHSSNEYSPPSSGMFSNFLAPGLGPLTADSALCSVSLIG 447
           P++P    N  +P    +   FL PG   L   S    ++L+G
Sbjct: 240 PQYPDEKLNTIAPNPMQLVEPFLTPGQNDLNPKSMSSLINLLG 282


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,206,864
Number of Sequences: 27780
Number of extensions: 348795
Number of successful extensions: 917
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)