Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0086
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1365 + 29598130-29598523,29599016-29599078,29599292-29599398 31 0.85
04_04_0063 - 22441549-22442961 30 1.5
04_01_0154 - 1775693-1775942,1776834-1777588 30 1.5
03_06_0316 + 33091194-33091370,33091451-33092155 29 2.6
12_02_0827 + 23492583-23492633,23493018-23493566,23493722-23494012 29 3.4
11_02_0082 - 8088169-8088284,8088613-8088697,8090344-8090442,809... 28 6.0
01_06_0789 - 32010131-32010330,32010438-32010866,32011658-320117... 28 6.0
08_02_0819 - 21529913-21530064,21531016-21531082,21531284-215313... 28 7.9
02_02_0471 - 10714440-10714846,10714947-10715034,10715427-107155... 28 7.9
01_06_1227 + 35531840-35532516,35532665-35532836,35533158-355333... 28 7.9
>06_03_1365 + 29598130-29598523,29599016-29599078,29599292-29599398
Length = 187
Score = 31.1 bits (67), Expect = 0.85
Identities = 21/48 (43%), Positives = 26/48 (54%)
Frame = -3
Query: 428 VSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKA 285
V+T SA S +S A AAAA G T + + SA+ GNAAS A
Sbjct: 109 VTTDASACAKSASSSATAAAAAAGAGTAGSTAAS--SASTGNAASTAA 154
>04_04_0063 - 22441549-22442961
Length = 470
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = -3
Query: 425 STRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKG--NAASRKAT*GSRMTTNSN 252
+T +AT S + A+TA+ A S+R VS+AKG AAS + T + T S+
Sbjct: 310 TTTTTATACSTPASARTASVADYGFDQHLPSVRLVSSAKGTPEAASHRWTAADKSRTPSS 369
Query: 251 SSVSAAD 231
S +
Sbjct: 370 RRYSIGE 376
>04_01_0154 - 1775693-1775942,1776834-1777588
Length = 334
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = -3
Query: 377 TAAAAKGESTTETESIRRVSAAKGNAASRKAT*GSRMTTNSNSSVSAADRGRA 219
TAA G +T S RR +GN A R ++ G++ ++V GRA
Sbjct: 126 TAARQDGGATRRNSSRRRRPRWRGNVARRSSSAGTQRRLTGQTAVGDGGEGRA 178
>03_06_0316 + 33091194-33091370,33091451-33092155
Length = 293
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = -3
Query: 428 VSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKA 285
++T ++ATE + +E AAA + +T + + AK AA RKA
Sbjct: 1 MATDVAATEPEVAAEEAAAAAPETTATAGDSKPAKEAKAKKAAAPRKA 48
>12_02_0827 + 23492583-23492633,23493018-23493566,23493722-23494012
Length = 296
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = -3
Query: 443 KRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKA 285
KRST+ S+ S+ + A AAA STT T + S+A AA+ A
Sbjct: 148 KRSTKKSSSSSSRQGGGAGNA-AAAATSSSSTTSTSTTATTSSAAAPAAAAAA 199
>11_02_0082 -
8088169-8088284,8088613-8088697,8090344-8090442,
8090537-8090609,8090694-8090804,8090901-8091074,
8091184-8091574,8091662-8092283,8092379-8093251,
8093294-8093800
Length = 1016
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 471 PPPEPVEQRLPRIPAVAPPQ 530
PP +P+ LP+ PA PPQ
Sbjct: 555 PPHDPLAPSLPQAPAATPPQ 574
>01_06_0789 -
32010131-32010330,32010438-32010866,32011658-32011752,
32011836-32011933,32012586-32012942,32013615-32013792,
32013856-32013936,32014441-32014548,32014916-32015178
Length = 602
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 438 PLVQKHIYVHVPPPEPVEQRLPRIPAVAPPQ 530
P+++ H VHVP P P +P V P Q
Sbjct: 45 PVMRSHHVVHVPLPRPAVAVAVPVPQVRPAQ 75
>08_02_0819 -
21529913-21530064,21531016-21531082,21531284-21531373,
21531506-21531622,21532026-21532145,21532313-21533581
Length = 604
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -3
Query: 371 AAAKGESTTETESIRRVSAAKGNAASRKAT*GSRMTTNSNSSVSAADRG 225
AAA + S+ R SAA+G A++ +A R +++ SS S G
Sbjct: 54 AAASSVRRCTSPSLSRASAAEGTASTNRAQSAERRRSSTPSSSSTPSGG 102
>02_02_0471 -
10714440-10714846,10714947-10715034,10715427-10715516,
10715614-10715727
Length = 232
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -3
Query: 431 RVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKA 285
+VST + A E I + TAAAA+ E E + + A G +A
Sbjct: 127 KVSTLLPADEEEIKPKEATAAAAEEEKKEEAAAAAAATDAAGEEKKEEA 175
>01_06_1227 +
35531840-35532516,35532665-35532836,35533158-35533357,
35533467-35533622,35536878-35537235,35537407-35537418
Length = 524
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Frame = +1
Query: 85 GSVSFRPSTKCALSWYSPVWL---WPM--AALNLQWDTATPLP 198
G + T L+W+ P+WL W M AA N+ AT +P
Sbjct: 410 GGIRCAKETMPLLNWHGPIWLGTDWDMFHAAANVSRTAATRVP 452
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,044,576
Number of Sequences: 37544
Number of extensions: 269831
Number of successful extensions: 1406
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1401
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -