Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0084
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    26   4.5  
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    25   7.9  
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    25   7.9  

>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 507 QSTLITFCF*SIASVKLLYSDLRTICTLAVSFVI 406
           Q T I FCF S   +  ++  + +IC + +S +I
Sbjct: 253 QKTFIIFCFLSSFIITGVFFFIMSICPMVISLII 286


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 452 YNNFTEAMDQKQNVISVD 505
           Y N TE MD +QN I  D
Sbjct: 329 YTNITEIMDVRQNYIDAD 346


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -3

Query: 672 ITYLFWNRTSSNLFLVAINTIELKICI 592
           +TY+F+  +S + F  AINTI L +CI
Sbjct: 219 LTYVFFCASSCS-FNQAINTINLLLCI 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,472,484
Number of Sequences: 5004
Number of extensions: 43906
Number of successful extensions: 95
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)