Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0081
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    28   0.93 
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   1.6  
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    26   3.8  

>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +2

Query: 533 QCPVCDEEFHNNITLMTHIYSHVVEPP 613
           +CP C   FH     + HI SH  E P
Sbjct: 5   ECPFCKRVFHRQEHQVRHIRSHTGEKP 31


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 19/70 (27%), Positives = 30/70 (42%)
 Frame = +2

Query: 377  KQPKTYVDDDLDDIPLKNIKKEIQPEETVSMEKYYFGKLGSDEPGPRVAIAVQCPVCDEE 556
            K PK Y DD LD+     ++  ++P+       Y F K    E   + +I   C +   E
Sbjct: 1192 KHPKVYFDDVLDEERNCRMQLIVKPQSF-----YAFSKCPIVEKNSKKSI-FSCEITKVE 1245

Query: 557  FHNNITLMTH 586
            FH  +   +H
Sbjct: 1246 FHTAVPSSSH 1255


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = +2

Query: 494 GSDEPGPRVAIAVQCPVCDEEFHNNITLMTHIYSHVVEPP 613
           GS        +  +C  C + F    +L  H YSH  E P
Sbjct: 456 GSSSTSSAANVRYRCTECLQGFSRPSSLKIHTYSHTGERP 495


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,702,681
Number of Sequences: 5004
Number of extensions: 24486
Number of successful extensions: 79
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)