Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0081
         (614 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1180 + 28218386-28218649,28218725-28219202,28219309-282196...    29   3.9  
12_02_1128 - 26341118-26341204,26341302-26341441,26341567-263416...    27   8.9  
10_08_0789 + 20569738-20570207,20573425-20573464,20573484-205735...    27   8.9  
01_01_0650 - 4948852-4950012                                           27   8.9  

>06_03_1180 +
           28218386-28218649,28218725-28219202,28219309-28219697,
           28219785-28220426,28220466-28221368
          Length = 891

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +2

Query: 368 RSRKQPKTYVDDDLDDIPLKNIKKEIQPEETVSMEKYYFGKLGSDE 505
           + +K  K   DDD DD+ L+++ +EI  E     E    G+ G+DE
Sbjct: 306 KKKKSVKPSSDDDDDDVELEDVDEEIGEENAEEEE----GEEGADE 347


>12_02_1128 -
           26341118-26341204,26341302-26341441,26341567-26341663,
           26341755-26341830,26341919-26342118,26342199-26342297,
           26342395-26342479,26342786-26343024,26343233-26343403,
           26343605-26343848,26343980-26344253,26344755-26344934,
           26345342-26345423,26346209-26346278,26346802-26346901,
           26347003-26347097,26347181-26347317,26347342-26347420,
           26347591-26347651,26348580-26349009
          Length = 981

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +1

Query: 379 ATQDVR-GRRPG*YTAEEHQEGDPTRGDRVDGEVLL 483
           A  D++ GR PG Y   + Q G P      DG V+L
Sbjct: 441 AASDIQAGREPGRYAYNDEQTGQPATITSPDGAVVL 476


>10_08_0789 +
           20569738-20570207,20573425-20573464,20573484-20573536,
           20573633-20574212,20574323-20575384,20575631-20575813,
           20576112-20576199,20576285-20576532,20576712-20577053,
           20579026-20579163,20579521-20579547
          Length = 1076

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +1

Query: 394 RGRRPG*YTAEEHQEGDPTRGDRVDGEVLLREARQ*RARTQGG 522
           R RRPG   +    +GD   GD+ D E+ L + R+ R R  GG
Sbjct: 95  RRRRPGAGESVAIADGDGCEGDQRDDELALGDRRR-RERGGGG 136


>01_01_0650 - 4948852-4950012
          Length = 386

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 59  VRLNKIAANPFKNWKYPSN 115
           +RLNK+ ++P   W YPS+
Sbjct: 270 LRLNKVKSSPSGGWSYPSS 288


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,002,262
Number of Sequences: 37544
Number of extensions: 219464
Number of successful extensions: 712
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)