Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0081
(614 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L17337-2|AAP68929.1| 202|Caenorhabditis elegans Hypothetical pr... 32 0.37
U61955-7|AAV58862.1| 456|Caenorhabditis elegans Hypothetical pr... 31 0.49
U61955-6|AAC24408.2| 505|Caenorhabditis elegans Hypothetical pr... 31 0.49
U40414-1|AAA81404.2| 543|Caenorhabditis elegans Hypothetical pr... 31 0.49
AC025721-2|AAK29901.3| 976|Caenorhabditis elegans Hypothetical ... 31 0.49
Z70267-4|CAA94210.1| 314|Caenorhabditis elegans Hypothetical pr... 29 2.0
U23454-9|AAC46522.2| 249|Caenorhabditis elegans Hypothetical pr... 29 2.0
L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp (spli... 29 2.0
AC006625-13|ABI18147.1| 273|Caenorhabditis elegans Abnormal che... 29 2.0
AC006625-12|AAK68272.2| 214|Caenorhabditis elegans Abnormal che... 29 2.0
Z81556-2|CAB04525.2| 445|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z71260-1|CAA95798.1| 744|Caenorhabditis elegans Hypothetical pr... 29 3.5
U60113-1|AAB03334.1| 715|Caenorhabditis elegans SEM-4 short for... 29 3.5
U60112-1|AAB03333.1| 744|Caenorhabditis elegans SEM-4 long form... 29 3.5
Z82090-4|CAB05008.2| 543|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z75540-6|CAN86598.1| 584|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z75540-3|CAD01084.1| 581|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z75540-2|CAA99848.1| 582|Caenorhabditis elegans Hypothetical pr... 28 4.6
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 28 4.6
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 28 4.6
AL132876-17|CAC48140.1| 934|Caenorhabditis elegans Hypothetical... 28 6.1
L13200-3|AAA28192.1| 304|Caenorhabditis elegans C.elegans chrom... 27 8.1
AF039710-10|AAB96693.2| 393|Caenorhabditis elegans Hypothetical... 27 8.1
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 23 8.7
>L17337-2|AAP68929.1| 202|Caenorhabditis elegans Hypothetical
protein ZK686.5 protein.
Length = 202
Score = 31.9 bits (69), Expect = 0.37
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 509 GPRVAIAVQCPVCDEEFHNNITLMTH 586
GP I VQC +CD +F + +L TH
Sbjct: 162 GPNAKIYVQCELCDRQFKDKQSLRTH 187
>U61955-7|AAV58862.1| 456|Caenorhabditis elegans Hypothetical
protein M03D4.4b protein.
Length = 456
Score = 31.5 bits (68), Expect = 0.49
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = +2
Query: 494 GSDEPGPRVAIAVQCPVCDEEFHNNITLMTHIYSH 598
G + P P + +++ C +C +F++ + H+Y H
Sbjct: 264 GFEIPAPTIPLSLTCMICKSQFNSQPSFTLHMYMH 298
>U61955-6|AAC24408.2| 505|Caenorhabditis elegans Hypothetical
protein M03D4.4a protein.
Length = 505
Score = 31.5 bits (68), Expect = 0.49
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = +2
Query: 494 GSDEPGPRVAIAVQCPVCDEEFHNNITLMTHIYSH 598
G + P P + +++ C +C +F++ + H+Y H
Sbjct: 313 GFEIPAPTIPLSLTCMICKSQFNSQPSFTLHMYMH 347
>U40414-1|AAA81404.2| 543|Caenorhabditis elegans Hypothetical
protein F53B3.1 protein.
Length = 543
Score = 31.5 bits (68), Expect = 0.49
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +2
Query: 479 YFGKLGSDEPGPRVAIAVQCPVCDEEFHNNITLMTH 586
Y+G++ + + ++ QCP CD+ F N +L H
Sbjct: 310 YYGRIKQLKRPYKKKVSPQCPFCDKRFRNEFSLKKH 345
>AC025721-2|AAK29901.3| 976|Caenorhabditis elegans Hypothetical
protein Y48G8AL.10 protein.
Length = 976
Score = 31.5 bits (68), Expect = 0.49
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 533 QCPVCDEEFHNNITLMTHIYSHVVEPP 613
QC VCD+ F+ TL+ H+ H E P
Sbjct: 922 QCTVCDKSFYEKKTLVVHMRIHTGEMP 948
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 533 QCPVCDEEFHNNITLMTHIYSHVVEPP 613
+CP C F TL TH+ +H PP
Sbjct: 893 KCPTCSMSFRVKSTLTTHMQTHSDAPP 919
>Z70267-4|CAA94210.1| 314|Caenorhabditis elegans Hypothetical
protein K04C1.3 protein.
Length = 314
Score = 29.5 bits (63), Expect = 2.0
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +2
Query: 530 VQCPVCDEEFHNNITLMTHIYSHVVE 607
++CP+C E NN L+ H H ++
Sbjct: 68 LKCPICSREKSNNTELLRHYLQHFIK 93
>U23454-9|AAC46522.2| 249|Caenorhabditis elegans Hypothetical
protein C10A4.8 protein.
Length = 249
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 533 QCPVCDEEFHNNITLMTHIYSHVVEPP 613
+C VCD+ F + TL+TH H E P
Sbjct: 169 RCDVCDKTFSRSNTLITHKRIHTGEKP 195
>L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp
(splicing factor) relatedprotein 8 protein.
Length = 2329
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +2
Query: 383 PKTYVDDDLDDIPLKNIKKEIQPEETVSMEKYYF 484
P Y D+ LD PL+ I+ E+ PEE ++ ++++
Sbjct: 165 PLDYADNILDVEPLEPIQMELDPEEDGAVAEWFY 198
>AC006625-13|ABI18147.1| 273|Caenorhabditis elegans Abnormal
chemotaxis protein 1,isoform b protein.
Length = 273
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 536 CPVCDEEFHNNITLMTHIYSHVVEPP 613
CPVC+ F + +L+TH +H E P
Sbjct: 196 CPVCNRPFSQSSSLVTHRRTHTGERP 221
>AC006625-12|AAK68272.2| 214|Caenorhabditis elegans Abnormal
chemotaxis protein 1,isoform a protein.
Length = 214
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 536 CPVCDEEFHNNITLMTHIYSHVVEPP 613
CPVC+ F + +L+TH +H E P
Sbjct: 137 CPVCNRPFSQSSSLVTHRRTHTGERP 162
>Z81556-2|CAB04525.2| 445|Caenorhabditis elegans Hypothetical
protein F58G1.2 protein.
Length = 445
Score = 29.1 bits (62), Expect = 2.6
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 533 QCPVCDEEFHNNITLMTHI 589
QCP CD+ F N+I+ H+
Sbjct: 230 QCPFCDKRFRNDISFNNHL 248
>Z71260-1|CAA95798.1| 744|Caenorhabditis elegans Hypothetical
protein F15C11.1 protein.
Length = 744
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = +2
Query: 515 RVAIAVQCPVCDEEFHNNITLMTHIYSH---VVEPP 613
++ + QCP+C + F N L HI H + +PP
Sbjct: 406 QIQASQQCPICQQRFLNAGELAVHITEHRNSLTQPP 441
>U60113-1|AAB03334.1| 715|Caenorhabditis elegans SEM-4 short form
protein.
Length = 715
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = +2
Query: 515 RVAIAVQCPVCDEEFHNNITLMTHIYSH---VVEPP 613
++ + QCP+C + F N L HI H + +PP
Sbjct: 377 QIQASQQCPICQQRFLNAGELAVHITEHRNSLTQPP 412
>U60112-1|AAB03333.1| 744|Caenorhabditis elegans SEM-4 long form
protein.
Length = 744
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = +2
Query: 515 RVAIAVQCPVCDEEFHNNITLMTHIYSH---VVEPP 613
++ + QCP+C + F N L HI H + +PP
Sbjct: 406 QIQASQQCPICQQRFLNAGELAVHITEHRNSLTQPP 441
>Z82090-4|CAB05008.2| 543|Caenorhabditis elegans Hypothetical
protein ZK337.2 protein.
Length = 543
Score = 28.3 bits (60), Expect = 4.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 536 CPVCDEEFHNNITLMTHIYSHVVEPP 613
CP C++ F + L TH+ +H E P
Sbjct: 399 CPTCNQVFSRSDHLSTHLRTHTGEKP 424
>Z75540-6|CAN86598.1| 584|Caenorhabditis elegans Hypothetical
protein F37D6.2c protein.
Length = 584
Score = 28.3 bits (60), Expect = 4.6
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 536 CPVCDEEFHNNITLMTHIYSHV 601
C +C+ +F N+I L TH+ H+
Sbjct: 275 CNICELDFGNSIALNTHMKKHI 296
>Z75540-3|CAD01084.1| 581|Caenorhabditis elegans Hypothetical
protein F37D6.2b protein.
Length = 581
Score = 28.3 bits (60), Expect = 4.6
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 536 CPVCDEEFHNNITLMTHIYSHV 601
C +C+ +F N+I L TH+ H+
Sbjct: 274 CNICELDFGNSIALNTHMKKHI 295
>Z75540-2|CAA99848.1| 582|Caenorhabditis elegans Hypothetical
protein F37D6.2a protein.
Length = 582
Score = 28.3 bits (60), Expect = 4.6
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 536 CPVCDEEFHNNITLMTHIYSHV 601
C +C+ +F N+I L TH+ H+
Sbjct: 275 CNICELDFGNSIALNTHMKKHI 296
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/36 (47%), Positives = 19/36 (52%)
Frame = +1
Query: 481 LREARQ*RARTQGGHCSTMPGL*RGVPQQHNPDDPH 588
L AR+ R R GG MPG GVP Q P +PH
Sbjct: 87 LEAARRERMRGLGGPPPGMPG---GVPPQAQPFNPH 119
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/36 (47%), Positives = 19/36 (52%)
Frame = +1
Query: 481 LREARQ*RARTQGGHCSTMPGL*RGVPQQHNPDDPH 588
L AR+ R R GG MPG GVP Q P +PH
Sbjct: 367 LEAARRERMRGLGGPPPGMPG---GVPPQAQPFNPH 399
>AL132876-17|CAC48140.1| 934|Caenorhabditis elegans Hypothetical
protein Y105E8A.21 protein.
Length = 934
Score = 27.9 bits (59), Expect = 6.1
Identities = 9/20 (45%), Positives = 17/20 (85%)
Frame = +2
Query: 530 VQCPVCDEEFHNNITLMTHI 589
V+C VCD+E+ N+++++ HI
Sbjct: 218 VKCLVCDKEYTNHMSIIYHI 237
>L13200-3|AAA28192.1| 304|Caenorhabditis elegans C.elegans
chromodomain proteinprotein 1 protein.
Length = 304
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = +2
Query: 365 RRSRKQPKTYVDDDLDDIPLKNIKKEIQPEETVSME 472
++S+ + + V+DD + +P K + + +PEE S+E
Sbjct: 137 KKSKAEDEEEVEDDEEPVPKKKKEVQEEPEEEESVE 172
>AF039710-10|AAB96693.2| 393|Caenorhabditis elegans Hypothetical
protein C46E10.9 protein.
Length = 393
Score = 27.5 bits (58), Expect = 8.1
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = +2
Query: 533 QCPVCDEEFHNNITLMTHIYSHVVE 607
+C +C + H L H+Y+H+ E
Sbjct: 239 KCNICQQTLHRENRLQEHLYTHLKE 263
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 23.0 bits (47), Expect(2) = 8.7
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +1
Query: 31 HHGV*GRHHSAP 66
HHG G HH AP
Sbjct: 425 HHGHHGEHHHAP 436
Score = 22.6 bits (46), Expect(2) = 8.7
Identities = 8/19 (42%), Positives = 9/19 (47%)
Frame = +1
Query: 1 QHRDPHLRADHHGV*GRHH 57
+H H HHG G HH
Sbjct: 408 EHHGTHHSPAHHGEHGTHH 426
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,925,282
Number of Sequences: 27780
Number of extensions: 159689
Number of successful extensions: 677
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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