Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0081
         (614 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    26   0.25 
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    26   0.34 
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   4.1  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   7.2  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   9.6  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   9.6  

>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +2

Query: 533 QCPVCDEEFHNNITLMTHIYSH 598
           +C +C+  + +  +LMTHIY++
Sbjct: 37  RCVICERVYCSRNSLMTHIYTY 58


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 533 QCPVCDEEFHNNITLMTHIYSHVVEPP 613
           +CP C + F  +  L TH+  H  E P
Sbjct: 11  ECPECHKRFTRDHHLKTHMRLHTGEKP 37


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 458 TVSMEKYYFGKLGSDEPGPRV 520
           T+S +KY  G L S+E   R+
Sbjct: 378 TISFQKYMSGTLNSNETNFRI 398


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 401 DDLD-DIPLKNIKKEIQPEETVSMEK 475
           +DL+   PL+NI +  Q +ET + EK
Sbjct: 510 EDLEMGTPLENILESCQQDETHAPEK 535


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = -3

Query: 585 WVIRVMLLWNSSSQTGHCTAMAT 517
           W I  M  WN     G+ TA  T
Sbjct: 182 WTIAPMFGWNRYVPEGNMTACGT 204


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = -3

Query: 585 WVIRVMLLWNSSSQTGHCTAMAT 517
           W I  M  WN     G+ TA  T
Sbjct: 58  WTIAPMFGWNRYVPEGNMTACGT 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,380
Number of Sequences: 438
Number of extensions: 2054
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)