Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0080
(660 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58944| Best HMM Match : fn3 (HMM E-Value=0.88) 42 6e-04
SB_12041| Best HMM Match : PHD (HMM E-Value=0.001) 32 0.36
SB_51651| Best HMM Match : 7tm_1 (HMM E-Value=0) 31 0.83
SB_59656| Best HMM Match : GRIP (HMM E-Value=7.5) 30 1.5
SB_37094| Best HMM Match : PH (HMM E-Value=0.0005) 30 1.5
SB_53096| Best HMM Match : PHD (HMM E-Value=0.001) 30 1.9
SB_29292| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_48561| Best HMM Match : AAA (HMM E-Value=0) 29 4.4
SB_51334| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_43997| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_40532| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_2118| Best HMM Match : PAN (HMM E-Value=0.0011) 28 7.7
SB_49171| Best HMM Match : CBFB_NFYA (HMM E-Value=1.7) 28 7.7
SB_16617| Best HMM Match : Vicilin_N (HMM E-Value=5.5) 28 7.7
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
>SB_58944| Best HMM Match : fn3 (HMM E-Value=0.88)
Length = 697
Score = 41.5 bits (93), Expect = 6e-04
Identities = 34/99 (34%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Frame = +1
Query: 259 RNRGG-KYDVHDRELAH-GRRDY-PDAGFH-EYTHPLDNKSRHSMSSGTKPGPESDTDSM 426
R RGG KY V RE G D PD + E D+ G + D DS+
Sbjct: 598 RKRGGAKYQVGKREKERAGMLDQMPDEEDNIEMAGRGDDNPPPYSDGSIGRGSDDDKDSL 657
Query: 427 AEYGDGETAGMNEDGSFIGQYGRKRRPPTSGQPDSASQA 543
+YG+G EDGSFI +YG ++ T G+ D + A
Sbjct: 658 DDYGEGPQ--FKEDGSFIEEYGDDKKKLTDGKNDKNAAA 694
>SB_12041| Best HMM Match : PHD (HMM E-Value=0.001)
Length = 560
Score = 32.3 bits (70), Expect = 0.36
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -2
Query: 473 EPSSFMPAVSPSPYSAIESVSLSGPGLVPLLIEWRDLLSNG 351
E + F+P + PSPY I S +S G++ LL +NG
Sbjct: 391 EDNGFIPTLGPSPYPTIPSTLISIDGVIKLLQNGNPKKANG 431
>SB_51651| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 431
Score = 31.1 bits (67), Expect = 0.83
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = -2
Query: 185 AVAIFSSGFTIGPSMEVSTVRSSLVLK*WPSCTVTLTSYSWPGSSPVRI 39
+VA ++ T S + V SS VL WP+ T TS S+P R+
Sbjct: 6 SVAATTASLTTSASFPATPVPSSTVLSPWPNSTYNSTSPLSTNSTPARV 54
>SB_59656| Best HMM Match : GRIP (HMM E-Value=7.5)
Length = 186
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 355 LDNKSRHSMSSGTKPGPESDTDSMAEYGDGETAGMNEDGSFI 480
L+ K HS+ G++ P+S S + E AGM G ++
Sbjct: 36 LNKKPSHSLQKGSEQNPQSSDPSKTVISEREKAGMQYLGGYV 77
>SB_37094| Best HMM Match : PH (HMM E-Value=0.0005)
Length = 1007
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = -2
Query: 197 MNQPAVAIFSSGF-TIGPSMEVSTVRSSLVLK*WPSCTVTLTSYSWPGSS 51
+ +P +G+ +IGPS+ VS+ +S L PS TVT + + PGS+
Sbjct: 139 VEEPVFQEKEAGYESIGPSLSVSSEKSVLSTSTTPSDTVTQDANNSPGST 188
>SB_53096| Best HMM Match : PHD (HMM E-Value=0.001)
Length = 623
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -2
Query: 473 EPSSFMPAVSPSPYSAIESVSLSGPGLVPLLIEWRDLLSNG 351
E +S +P + PSPY I S +S G++ LL +NG
Sbjct: 461 ENNSSIPTLGPSPYPTIPSTLISIDGVIKLLQNVNPKKANG 501
>SB_29292| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 717
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -2
Query: 473 EPSSFMPAVSPSPYSAIESVSLSGPGLVPLLIEWRDLLSNG 351
E +S +P + PSPY I S +S G++ LL +NG
Sbjct: 576 ENNSSIPTLGPSPYPTIPSTLISIDGVIKLLQNVNPEKANG 616
>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +1
Query: 388 GTKPGPESDTDSMAEYG--DGETAGMNEDGSFIGQYGRKRRPPTSGQPDSAS 537
GT+PGP +M YG E G S YG+ PPTS P SA+
Sbjct: 303 GTQPGP----GAMGAYGAPPREAPGAYAPQSGAADYGQAGVPPTSAIPGSAA 350
>SB_48561| Best HMM Match : AAA (HMM E-Value=0)
Length = 2021
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 337 HEYTHPLDNKSRHSMSSGTKPGPESDTDSMAEYGDGETAGMNED 468
H+ P+ + RH + +SD D E GDGE G +E+
Sbjct: 749 HDTPSPVKHGQRHQQEEDDEDD-DSDDDEEEEEGDGEDEGEDEE 791
>SB_51334| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1402
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -2
Query: 473 EPSSFMPAVSPSPYSAIESVSLSGPGLVPLLIEWRDLLSNG 351
E + +P + PSPY I S +S G++ LL +NG
Sbjct: 523 ENNGSIPTLGPSPYPTIPSTLISIDGVIKLLQNVNPKKANG 563
>SB_43997| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1067
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -2
Query: 488 YCPMKEPSSFMPAVSPSPYSAIESVSLSGPGLVP 387
Y P PSS P+V PS + S S S P + P
Sbjct: 140 YPPSSSPSSSFPSVPPSSPPSSSSPSSSSPSVPP 173
>SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1221
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = -2
Query: 491 PYCPMKEPSSFMPAVSPSPYSAIESVSLSGPGLVP 387
P+ P + PS+ P+ P P S++++ S ++P
Sbjct: 430 PFHPQRSPSASKPSSRPPPLSSVQNPSKQDKKVIP 464
>SB_40532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +3
Query: 15 RHHRGRLRDPDGAGARPAVRGQGHGARRPLLQHQRAADGRHLHRRTDSEAGREDR 179
RH + +D D ARP + +P Q ++AA R R+T++ ++ R
Sbjct: 95 RHKTSKPQDRDKQAARPRQASRKTETSKPQDQDKQAARPRQASRKTETSKPQDTR 149
>SB_2118| Best HMM Match : PAN (HMM E-Value=0.0011)
Length = 521
Score = 27.9 bits (59), Expect = 7.7
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = -2
Query: 488 YCPMKEPSSFMPAVSPSPYSAIESVS 411
YCP + S++ PA++ S + A E+++
Sbjct: 370 YCPTVDKSNYWPAINTSQHEAFEALA 395
>SB_49171| Best HMM Match : CBFB_NFYA (HMM E-Value=1.7)
Length = 211
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 114 QRAADGRHLHRRTDSEAGREDRDRGLVHR 200
Q++ DG LH+ D EA RD+G +++
Sbjct: 74 QKSRDGGALHKSRDDEAMLRPRDKGALYK 102
>SB_16617| Best HMM Match : Vicilin_N (HMM E-Value=5.5)
Length = 547
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +3
Query: 6 ADQRHHRGRLRDPDGAGARPAVRGQGHGARRPLLQHQRAADGRHLHRRTDSEAGREDR 179
A ++ + +D D ARP G+ +P Q ++AA R R+T + ++ R
Sbjct: 358 ASRKTKTSKPQDQDKQAARPRQAGRKTKTSKPQAQDKQAASPRQASRKTKTSKQQDAR 415
>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2323
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/47 (36%), Positives = 19/47 (40%)
Frame = +1
Query: 397 PGPESDTDSMAEYGDGETAGMNEDGSFIGQYGRKRRPPTSGQPDSAS 537
PGP+ T G T G G G PPT+G P SAS
Sbjct: 295 PGPKPTTSPATTPTSG-TEGAGTGGPGTGGPSGSSNPPTTGTPASAS 340
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,175,403
Number of Sequences: 59808
Number of extensions: 289338
Number of successful extensions: 1193
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1188
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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