Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0080
(660 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U50067-4|AAA93439.3| 1144|Caenorhabditis elegans Sensory axon gu... 58 7e-09
U50067-2|AAY86218.1| 1328|Caenorhabditis elegans Sensory axon gu... 58 7e-09
U50067-3|AAZ32801.1| 1147|Caenorhabditis elegans Sensory axon gu... 52 5e-07
U50067-1|AAZ32800.1| 1331|Caenorhabditis elegans Sensory axon gu... 52 5e-07
AB206670-1|BAD97389.1| 1147|Caenorhabditis elegans SAX-7 SHORTFO... 52 5e-07
AB206669-1|BAD97388.1| 1331|Caenorhabditis elegans SAX-7 LONGFOR... 52 5e-07
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 30 1.3
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 30 1.3
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 30 1.3
U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter... 30 1.7
L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein. 30 1.7
AF016671-3|AAB66109.2| 205|Caenorhabditis elegans Collagen prot... 30 1.7
AC087232-2|AAK09076.4| 401|Caenorhabditis elegans Hypothetical ... 30 1.7
U97194-2|AAN84846.1| 806|Caenorhabditis elegans Prion-like-(q/n... 29 3.9
U32305-1|AAK18854.2| 469|Caenorhabditis elegans Hypothetical pr... 27 8.9
>U50067-4|AAA93439.3| 1144|Caenorhabditis elegans Sensory axon
guidance protein 7,isoform a protein.
Length = 1144
Score = 57.6 bits (133), Expect = 7e-09
Identities = 37/93 (39%), Positives = 51/93 (54%)
Frame = +1
Query: 259 RNRGGKYDVHDRELAHGRRDYPDAGFHEYTHPLDNKSRHSMSSGTKPGPESDTDSMAEYG 438
R RG Y V RE GR P G +Y D+ + S++ G+K ES+TDSMA+YG
Sbjct: 1054 RQRGQNYPVSQREREQGRE--PILGKPDYK--TDDDEKRSLT-GSKA--ESETDSMAQYG 1106
Query: 439 DGETAGMNEDGSFIGQYGRKRRPPTSGQPDSAS 537
D + EDGSFIGQY ++ + +P+ S
Sbjct: 1107 DTDPGVFTEDGSFIGQYVPQKSLMPAERPEKGS 1139
>U50067-2|AAY86218.1| 1328|Caenorhabditis elegans Sensory axon
guidance protein 7,isoform b protein.
Length = 1328
Score = 57.6 bits (133), Expect = 7e-09
Identities = 37/93 (39%), Positives = 51/93 (54%)
Frame = +1
Query: 259 RNRGGKYDVHDRELAHGRRDYPDAGFHEYTHPLDNKSRHSMSSGTKPGPESDTDSMAEYG 438
R RG Y V RE GR P G +Y D+ + S++ G+K ES+TDSMA+YG
Sbjct: 1238 RQRGQNYPVSQREREQGRE--PILGKPDYK--TDDDEKRSLT-GSKA--ESETDSMAQYG 1290
Query: 439 DGETAGMNEDGSFIGQYGRKRRPPTSGQPDSAS 537
D + EDGSFIGQY ++ + +P+ S
Sbjct: 1291 DTDPGVFTEDGSFIGQYVPQKSLMPAERPEKGS 1323
>U50067-3|AAZ32801.1| 1147|Caenorhabditis elegans Sensory axon
guidance protein 7,isoform d protein.
Length = 1147
Score = 51.6 bits (118), Expect = 5e-07
Identities = 37/96 (38%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Frame = +1
Query: 259 RNRGGKYDVHDRELAHGRRDYPDAGFHEYTHPLDNKSRHSMSSGTKPGPESDTDSMAEYG 438
R RG Y V RE GR P G +Y D+ + S++ G+K ES+TDSMA+YG
Sbjct: 1054 RQRGQNYPVSQREREQGRE--PILGKPDYK--TDDDEKRSLT-GSKA--ESETDSMAQYG 1106
Query: 439 DGETAGMNEDGSFI---GQYGRKRRPPTSGQPDSAS 537
D + EDGSFI GQY ++ + +P+ S
Sbjct: 1107 DTDPGVFTEDGSFIAVSGQYVPQKSLMPAERPEKGS 1142
>U50067-1|AAZ32800.1| 1331|Caenorhabditis elegans Sensory axon
guidance protein 7,isoform c protein.
Length = 1331
Score = 51.6 bits (118), Expect = 5e-07
Identities = 37/96 (38%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Frame = +1
Query: 259 RNRGGKYDVHDRELAHGRRDYPDAGFHEYTHPLDNKSRHSMSSGTKPGPESDTDSMAEYG 438
R RG Y V RE GR P G +Y D+ + S++ G+K ES+TDSMA+YG
Sbjct: 1238 RQRGQNYPVSQREREQGRE--PILGKPDYK--TDDDEKRSLT-GSKA--ESETDSMAQYG 1290
Query: 439 DGETAGMNEDGSFI---GQYGRKRRPPTSGQPDSAS 537
D + EDGSFI GQY ++ + +P+ S
Sbjct: 1291 DTDPGVFTEDGSFIAVSGQYVPQKSLMPAERPEKGS 1326
>AB206670-1|BAD97389.1| 1147|Caenorhabditis elegans SAX-7 SHORTFORM
protein.
Length = 1147
Score = 51.6 bits (118), Expect = 5e-07
Identities = 37/96 (38%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Frame = +1
Query: 259 RNRGGKYDVHDRELAHGRRDYPDAGFHEYTHPLDNKSRHSMSSGTKPGPESDTDSMAEYG 438
R RG Y V RE GR P G +Y D+ + S++ G+K ES+TDSMA+YG
Sbjct: 1054 RQRGQNYPVSQREREQGRE--PILGKPDYK--TDDDEKRSLT-GSKA--ESETDSMAQYG 1106
Query: 439 DGETAGMNEDGSFI---GQYGRKRRPPTSGQPDSAS 537
D + EDGSFI GQY ++ + +P+ S
Sbjct: 1107 DTDPGVFTEDGSFIAVSGQYVPQKSLMPAERPEKGS 1142
>AB206669-1|BAD97388.1| 1331|Caenorhabditis elegans SAX-7 LONGFORM
protein.
Length = 1331
Score = 51.6 bits (118), Expect = 5e-07
Identities = 37/96 (38%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Frame = +1
Query: 259 RNRGGKYDVHDRELAHGRRDYPDAGFHEYTHPLDNKSRHSMSSGTKPGPESDTDSMAEYG 438
R RG Y V RE GR P G +Y D+ + S++ G+K ES+TDSMA+YG
Sbjct: 1238 RQRGQNYPVSQREREQGRE--PILGKPDYK--TDDDEKRSLT-GSKA--ESETDSMAQYG 1290
Query: 439 DGETAGMNEDGSFI---GQYGRKRRPPTSGQPDSAS 537
D + EDGSFI GQY ++ + +P+ S
Sbjct: 1291 DTDPGVFTEDGSFIAVSGQYVPQKSLMPAERPEKGS 1326
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical protein
K07E12.1b protein.
Length = 12268
Score = 30.3 bits (65), Expect = 1.3
Identities = 23/73 (31%), Positives = 27/73 (36%), Gaps = 2/73 (2%)
Frame = +1
Query: 307 GRRDYPDAGFHEYTHPLDNKSRHSMSSGTKPGPESDTDSMAEY--GDGETAGMNEDGSFI 480
G YP G E P DN + G TDS + GDG NE+G I
Sbjct: 10873 GNYIYPAVGSDEKILPTDNLGKVVYPITRPDGSPLATDSTGVFVTGDGTIVERNEEGKPI 10932
Query: 481 GQYGRKRRPPTSG 519
G G+ SG
Sbjct: 10933 GPDGQVLTTDNSG 10945
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein
K07E12.1a protein.
Length = 13100
Score = 30.3 bits (65), Expect = 1.3
Identities = 23/73 (31%), Positives = 27/73 (36%), Gaps = 2/73 (2%)
Frame = +1
Query: 307 GRRDYPDAGFHEYTHPLDNKSRHSMSSGTKPGPESDTDSMAEY--GDGETAGMNEDGSFI 480
G YP G E P DN + G TDS + GDG NE+G I
Sbjct: 10918 GNYIYPAVGSDEKILPTDNLGKVVYPITRPDGSPLATDSTGVFVTGDGTIVERNEEGKPI 10977
Query: 481 GQYGRKRRPPTSG 519
G G+ SG
Sbjct: 10978 GPDGQVLTTDNSG 10990
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein.
Length = 13100
Score = 30.3 bits (65), Expect = 1.3
Identities = 23/73 (31%), Positives = 27/73 (36%), Gaps = 2/73 (2%)
Frame = +1
Query: 307 GRRDYPDAGFHEYTHPLDNKSRHSMSSGTKPGPESDTDSMAEY--GDGETAGMNEDGSFI 480
G YP G E P DN + G TDS + GDG NE+G I
Sbjct: 10918 GNYIYPAVGSDEKILPTDNLGKVVYPITRPDGSPLATDSTGVFVTGDGTIVERNEEGKPI 10977
Query: 481 GQYGRKRRPPTSG 519
G G+ SG
Sbjct: 10978 GPDGQVLTTDNSG 10990
>U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 2 protein.
Length = 380
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +1
Query: 352 PLDNKSRHSMSSGTKPGPESDTDSMAEYGDGETAGMNEDGSFIGQYGRKRRPPTSGQP 525
P+ +K R + + PGP D+ +G +AGM + + G G K P G P
Sbjct: 223 PIGDKGR-TPEAHVIPGPPGDSGLPGPWGPPGSAGMPGEDGYAGTPGEKGWPGPPGAP 279
>L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein.
Length = 360
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +1
Query: 352 PLDNKSRHSMSSGTKPGPESDTDSMAEYGDGETAGMNEDGSFIGQYGRKRRPPTSGQP 525
P+ +K R + + PGP D+ +G +AGM + + G G K P G P
Sbjct: 223 PIGDKGR-TPEAHVIPGPPGDSGLPGPWGPPGSAGMPGEDGYAGTPGEKGWPGPPGAP 279
>AF016671-3|AAB66109.2| 205|Caenorhabditis elegans Collagen protein
72 protein.
Length = 205
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/64 (28%), Positives = 26/64 (40%)
Frame = +1
Query: 340 EYTHPLDNKSRHSMSSGTKPGPESDTDSMAEYGDGETAGMNEDGSFIGQYGRKRRPPTSG 519
E P+ + R G PGP + G+G G N G+ GR+ +P +G
Sbjct: 48 EILPPVPTRPRGQPGYGGPPGPPGLPGQPGQNGNGGRPGNNGPMGQPGEPGREGQPGKAG 107
Query: 520 QPDS 531
P S
Sbjct: 108 GPGS 111
>AC087232-2|AAK09076.4| 401|Caenorhabditis elegans Hypothetical
protein Y92H12BR.6 protein.
Length = 401
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = -1
Query: 138 GVDRPQLAGAEVVAVVHRDLDLVQLAGLQPRQDHEVVLGDV 16
G P GA+V+ L L ++AG+Q ++HE+VL +V
Sbjct: 246 GFTLPHNLGAKVLIPQEMLLTLAKIAGIQVTREHEMVLEEV 286
>U97194-2|AAN84846.1| 806|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 21,
isoform b protein.
Length = 806
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +1
Query: 358 DNKSRHSMSSGTKPGPESDTDSMAEYGDGETAG-MNEDGSFIGQYGRKRRPPTS 516
+NK + + SSG + G + + S + G G G + +DG Q G++++ T+
Sbjct: 347 NNKKKTASSSGNEEGKDGRSSSASSNGRGARGGSVLKDGKGDKQKGKRKKEETN 400
>U32305-1|AAK18854.2| 469|Caenorhabditis elegans Hypothetical
protein B0336.6 protein.
Length = 469
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -2
Query: 506 GRRFRPYCPMKEPSSF-MPAVSPSPYSAI 423
GR RPY P PS + +P V+P S I
Sbjct: 200 GRTMRPYAPSIAPSDYRLPQVTPQSESRI 228
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,920,979
Number of Sequences: 27780
Number of extensions: 210304
Number of successful extensions: 893
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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