Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0080
         (660 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35630.1 68415.m04369 microtubule organization 1 protein (MOR...    32   0.29 
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ...    31   0.51 
At2g17820.1 68415.m02064 histidine kinase 1 99% identical to GP:...    31   0.68 
At1g24340.1 68414.m03070 monooxygenase family protein similar to...    29   2.7  
At4g28365.1 68417.m04060 plastocyanin-like domain-containing pro...    28   4.8  
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein...    28   6.3  
At5g01700.1 68418.m00087 protein phosphatase 2C, putative / PP2C...    27   8.4  
At4g28380.1 68417.m04062 leucine-rich repeat family protein cont...    27   8.4  
At3g63100.1 68416.m07087 glycine-rich protein                          27   8.4  
At2g35230.2 68415.m04322 VQ motif-containing protein contains PF...    27   8.4  
At2g35230.1 68415.m04321 VQ motif-containing protein contains PF...    27   8.4  
At2g22080.1 68415.m02622 expressed protein                             27   8.4  

>At2g35630.1 68415.m04369 microtubule organization 1 protein (MOR1)
           identical to microtubule organization 1 protein
           GI:14317953 from [Arabidopsis thaliana]
          Length = 1978

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +1

Query: 364 KSRHSMSSGTKPGPESDTDSMAEYGDGETAGMNEDGSFIGQYGRKRRPPTSGQP 525
           KS  SM SG +P P +      + G G+  G  +DGS   +  +   PP   +P
Sbjct: 536 KSAASMLSGKRPAPSAQASK--KVGTGKPGGGKKDGSVRNEGSKSVEPPEDVEP 587


>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
           protein 
          Length = 809

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +1

Query: 367 SRHSMSSGTKPGPESDTDSMAEYGDGETAGMNEDGSFIGQYG 492
           SR+SMS+    GP S    M +YG G  +G +  G +   YG
Sbjct: 733 SRNSMSNHDSRGPYSSRQGM-DYGGGSYSGSDVGGMYSSSYG 773


>At2g17820.1 68415.m02064 histidine kinase 1 99% identical to
           GP:4586626
          Length = 1207

 Score = 31.1 bits (67), Expect = 0.68
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 61  GQLYEVKVTVHDGHYFSTS-ELRTVDTSIDGPIVK 162
           GQL    V VH GH + TS E   + TS DGP++K
Sbjct: 326 GQLMRDLVEVHGGHIYLTSQEGYLLATSTDGPLLK 360


>At1g24340.1 68414.m03070 monooxygenase family protein similar to
           polyketide hydroxylases from several bacterial species;
           contains Pfam:PF01360 [Monooxygenase]
          Length = 707

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 536 EAESGWPDVGGRRFRPYCPMKEPSSFMP 453
           E+E+G P+V   R R Y P  EP S +P
Sbjct: 533 ESEAGDPEVPSGRRRDYVPCAEPGSRLP 560


>At4g28365.1 68417.m04060 plastocyanin-like domain-containing
           protein
          Length = 199

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -2

Query: 482 PMKEPSSFMPAVSPSPYSAIESVSLSGPGLVPLLI 378
           P  + +S +PA  P P +A  S  L GPG+V L+I
Sbjct: 161 PSSDSNSRVPA--PGPATAPNSAGLVGPGMVVLVI 193


>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative contains Pfam profile:
           PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
           domain)
          Length = 495

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
 Frame = +1

Query: 319 YPDAGFHEYTHPLDNKSRHSMSSGTKPGPESDTDSMAEYGDG------ETAGMNEDGSFI 480
           Y  AG  E+     N + +S  +   P PE++  +   YG G      + +  +    ++
Sbjct: 422 YDTAGLAEF---YGNGAVYSDPTWRSPTPETEGPAPFSYGIGGGVPSSDVSARSSSPGYV 478

Query: 481 GQYGRKRRPPTSGQP 525
           G Y   +R P  G+P
Sbjct: 479 GSYSVNKRQPNRGEP 493


>At5g01700.1 68418.m00087 protein phosphatase 2C, putative / PP2C,
           putative protein phosphatase type 2C - Saccharomyces
           cerevisiae, EMBL:U72346
          Length = 333

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 525 RLAGCWRTSFPAVLSDEGAVLV 460
           R A  WRT FPA  +D+ AV+V
Sbjct: 264 RAARTWRTKFPASKADDCAVVV 285


>At4g28380.1 68417.m04062 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to extensin-like
           protein [Lycopersicon esculentum] gi|5917664|gb|AAD55979
          Length = 391

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +2

Query: 485 STAGNDVRQHPASRTQPRKHLQRSFK 562
           STA + +  H +  T P++HLQ++++
Sbjct: 22  STAKHSLHHHTSHSTNPKQHLQQAYR 47


>At3g63100.1 68416.m07087 glycine-rich protein 
          Length = 199

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 21/63 (33%), Positives = 22/63 (34%), Gaps = 2/63 (3%)
 Frame = +3

Query: 21  HRGRLRDPDGAGARPAVRGQGHGARRPLLQHQRAAD-GRHL-HRRTDSEAGREDRDRGLV 194
           HR    D      R    G GHG RR    H+   D G H  H        R  R RG  
Sbjct: 83  HREHGHDRGHGHGRGHGHGHGHGHRRHGRDHRHGRDRGHHRGHGHHHHRGHRRGRGRGHG 142

Query: 195 HRR 203
           H R
Sbjct: 143 HGR 145


>At2g35230.2 68415.m04322 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 295

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 518 PDVGGRRFRPYCPMKEPSSFMPAVSPS 438
           P + G   RPY P  E  S+MPA S S
Sbjct: 91  PYMPGNEQRPYIPGHEQRSYMPAQSQS 117


>At2g35230.1 68415.m04321 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 402

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 518 PDVGGRRFRPYCPMKEPSSFMPAVSPS 438
           P + G   RPY P  E  S+MPA S S
Sbjct: 198 PYMPGNEQRPYIPGHEQRSYMPAQSQS 224


>At2g22080.1 68415.m02622 expressed protein
          Length = 177

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 19/66 (28%), Positives = 29/66 (43%)
 Frame = +1

Query: 277 YDVHDRELAHGRRDYPDAGFHEYTHPLDNKSRHSMSSGTKPGPESDTDSMAEYGDGETAG 456
           Y+V D    +G  D  D+G  +     +  +  +    TK GP SD D   E GD +   
Sbjct: 56  YEVVDAVEGNGNND--DSG-DDGGEDEEGSADDAEGKETKKGPVSDPDLNGEAGDNDDEP 112

Query: 457 MNEDGS 474
             +DG+
Sbjct: 113 EGDDGN 118


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,534,167
Number of Sequences: 28952
Number of extensions: 203337
Number of successful extensions: 788
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)