Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0079
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    26   4.5  
SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator related|Schiz...    26   4.5  
SPBC1703.03c |||armadillo repeat protein, unknown biological rol...    26   4.5  
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    25   7.9  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   7.9  

>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 535 EERFVFVCIE*APKLLNRFKKFFHCLESTLFP 440
           EE+ +F+ I    ++L R +K    L +TLFP
Sbjct: 219 EEKTIFLVIAHGTQILLRIRKISESLGATLFP 250


>SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 265

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -3

Query: 692 YNNVIMRYKNI*TAFLFWNKYI 627
           +N ++   +N+ T  +FWNK+I
Sbjct: 51  FNYIVNESQNVSTRLIFWNKWI 72


>SPBC1703.03c |||armadillo repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 664

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 319 AGHAM**IF*VIFLHLGLHYWSFSKD 396
           AG  +  IF  IFL LGL  W FS +
Sbjct: 477 AGKILQWIFQTIFLRLGLGVWPFSSE 502


>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -1

Query: 493 LLNRFKKFFHCLESTLFPSDIGYNPFFFF-KFRDPY*NSNNVTQGVKKLPKIFITSRALR 317
           L+ +++ ++       F  DI Y+PF++  K    Y     + +  K +P +F  + A +
Sbjct: 215 LMQQYEWYWRLEPEVTFSCDISYDPFYYMDKHNKVYGYVIAIKELAKTVPNLFRYTVAHQ 274

Query: 316 KL 311
           K+
Sbjct: 275 KI 276


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 96   ETIYTLQAPRSGSARVFNKKFQRYLTFYFFK 188
            ET+ +   P S     F K F+RY  F+FF+
Sbjct: 3443 ETLNSSVFPESIYYDYFYKTFERYCDFWFFR 3473


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,701,107
Number of Sequences: 5004
Number of extensions: 54181
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)