Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0077
         (424 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   157   9e-40
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   0.69 
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    25   3.7  
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    25   4.8  
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    24   8.5  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    24   8.5  
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    24   8.5  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  157 bits (380), Expect = 9e-40
 Identities = 68/94 (72%), Positives = 86/94 (91%)
 Frame = +2

Query: 143 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 322
           ++++KEWVPVTKLGRLV+ GKI  +E IYL+SLPIKE++I+D+FL P LNDEV+K++PVQ
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQ 86

Query: 323 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCXKEV 424
           KQTRAGQRTRFKAFV IGD++GH+GLG+KC KEV
Sbjct: 87  KQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEV 120


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.9 bits (59), Expect = 0.69
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -3

Query: 140 RAHDHGRDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 15
           ++HDHG  H + H DR      +  R  R++R     ++ PP
Sbjct: 720 QSHDHGHSHSKSH-DREKEKEKKKDREHRKHRETEEEDEGPP 760


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +2

Query: 146 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIID 268
           +D+ EW P++    LV   ++   E  +++    K++E+ID
Sbjct: 241 KDKPEWQPISLKSELVPNEELLGEEYSHIYHTISKKYELID 281


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 252 NSRSLISSSARP*MMRF*RSCLYRNKHVPDSAHVSRH 362
           +SR+ I S+     +++  S   R KH+P+   ++RH
Sbjct: 348 SSRASIRSTREENRLKYLDSLRERYKHIPEIRRIARH 384


>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 13/44 (29%), Positives = 17/44 (38%)
 Frame = +2

Query: 257 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNG 388
           E    F G  +  E + ++P       G  TRF   V   D NG
Sbjct: 378 ETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTRFTGEVLTIDENG 421


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = -2

Query: 294 SFRDGPRKKSMISNSLIGKENK*MLSSLSIFPSRTRRPSLVTGTHS 157
           + R+G    ++ SNS++   N   L  L++F   T   S ++ +H+
Sbjct: 441 NLREGTPILAVASNSIVSMYNAISLQQLAVFMRHTAPVSALSFSHN 486


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -1

Query: 301 NLIIQGRAEEEINDLEFFDW*RKQVNALEFVDFSFANKTAEFGDRNPLF 155
           NL+   R   +      +D+    V++LE V  + A +T E+ DRNPL+
Sbjct: 369 NLLPHHRTGTKYRAYPTYDFACPIVDSLEGV--THALRTTEYRDRNPLY 415


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,534,253
Number of Sequences: 5004
Number of extensions: 27799
Number of successful extensions: 84
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)