Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0077
         (424 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0386 + 33555682-33556344,33557138-33557299                      146   6e-36
07_01_0756 + 5819367-5820038,5820847-5821005                          141   2e-34
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216...    42   3e-04
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871     31   0.29 
11_01_0395 + 2999855-2999920,3000605-3002191                           28   3.6  
11_01_0515 + 4003167-4003229,4003318-4003738,4004224-4004367,400...    27   4.7  
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509...    27   6.2  

>03_06_0386 + 33555682-33556344,33557138-33557299
          Length = 274

 Score =  146 bits (354), Expect = 6e-36
 Identities = 64/94 (68%), Positives = 81/94 (86%)
 Frame = +2

Query: 143 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 322
           ++++++WVPVTKLGRLV+EG+  K+E IYL SLP+KE +I++  + P L DEV+KI PVQ
Sbjct: 38  RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQIVETLV-PGLKDEVMKITPVQ 96

Query: 323 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCXKEV 424
           KQTRAGQRTRFKAFV +GDNNGH+GLGVKC KEV
Sbjct: 97  KQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEV 130


>07_01_0756 + 5819367-5820038,5820847-5821005
          Length = 276

 Score =  141 bits (342), Expect = 2e-34
 Identities = 63/94 (67%), Positives = 80/94 (85%)
 Frame = +2

Query: 143 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 322
           ++++++WVPVTKLGRLV+E KI K+E IYL SLP+KE +I++  + P L DEV+KI PVQ
Sbjct: 41  RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKEHQIVEQLV-PGLKDEVMKITPVQ 99

Query: 323 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCXKEV 424
           KQTRAGQRTRFKAFV +GD +GH+GLGVKC KEV
Sbjct: 100 KQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEV 133


>03_04_0238 -
           19219040-19219218,19220296-19220350,19221606-19221690,
           19222068-19222798
          Length = 349

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 17/45 (37%), Positives = 29/45 (64%)
 Frame = +2

Query: 290 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCXKEV 424
           ++ V+++  V K  + G++  F+A V +GD  GH+G+GV   KEV
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEV 215


>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
          Length = 233

 Score = 31.5 bits (68), Expect = 0.29
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +2

Query: 362 FVAIGDNNGHIGLGVKCXK 418
           FV +GD + HI LGVKC K
Sbjct: 2   FVVVGDGDSHIELGVKCAK 20


>11_01_0395 + 2999855-2999920,3000605-3002191
          Length = 550

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +2

Query: 230 LFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRT 349
           +F   +++ ++IDF L   L D  + I+P+    R G++T
Sbjct: 237 MFGRRVEKEKVIDFLLCSDLPDTYVSILPIIGPHRIGKKT 276


>11_01_0515 +
           4003167-4003229,4003318-4003738,4004224-4004367,
           4004474-4004556,4004661-4004775,4005309-4005400,
           4005558-4005612,4005689-4005834,4005888-4006001,
           4006149-4006342,4006985-4007112,4008526-4008583,
           4009800-4009876,4010214-4010263,4010336-4010515,
           4010633-4010731,4010816-4011133,4011221-4011281,
           4011693-4012781,4012951-4013005,4013133-4013291,
           4013923-4014442
          Length = 1406

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 146 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLG 280
           +  KE +P    G  V  G+    +++ + SLPIK++ +  FF G
Sbjct: 805 DGSKEVIPQEYCGLEVLSGEAAWSKNVLVPSLPIKKYPVHSFFSG 849


>11_04_0439 +
           17749634-17749858,17750164-17750301,17750770-17750943,
           17751099-17751184,17751264-17751525,17751616-17751815,
           17753631-17754086,17754198-17754474,17754694-17754828,
           17754946-17755026,17756305-17756400,17756676-17756771,
           17756844-17756900,17756975-17757043,17757158-17757237,
           17758185-17758329,17758422-17758511,17758914-17758994,
           17759103-17759198,17759279-17759335,17759417-17759461,
           17759547-17759612,17760304-17760350,17762771-17762865,
           17763375-17763393,17763438-17763498,17763637-17763660
          Length = 1085

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 424 DFLXALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 308
           +F+  LHT  +M   V      +E C LS    F+ +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,454,356
Number of Sequences: 37544
Number of extensions: 195407
Number of successful extensions: 612
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)