Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0077
         (424 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)              161   3e-40
SB_20635| Best HMM Match : rve (HMM E-Value=0.91)                      29   1.6  
SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.6  
SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_52533| Best HMM Match : rve (HMM E-Value=2)                         29   1.6  
SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)                  29   1.6  
SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)                     29   1.6  
SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)                 28   2.8  
SB_45835| Best HMM Match : TLD (HMM E-Value=0.4)                       28   3.7  

>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score =  161 bits (390), Expect = 3e-40
 Identities = 76/88 (86%), Positives = 81/88 (92%)
 Frame = +2

Query: 161 WVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAG 340
           WVPVTKLGRLV++ KI  LE IYLFSLPIKEFEIIDFFLG +L DEVLKIMPVQKQTRAG
Sbjct: 8   WVPVTKLGRLVKDLKIKTLEHIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAG 67

Query: 341 QRTRFKAFVAIGDNNGHIGLGVKCXKEV 424
           QRTRFKAFVAIGD+NGH+GLGVKC KEV
Sbjct: 68  QRTRFKAFVAIGDSNGHVGLGVKCSKEV 95


>SB_20635| Best HMM Match : rve (HMM E-Value=0.91)
          Length = 748

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 290 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 403
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 155 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 192


>SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 945

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 290 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 403
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 811 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 848


>SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2211

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 290  NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 403
            N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 2008 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 2045


>SB_52533| Best HMM Match : rve (HMM E-Value=2)
          Length = 212

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 290 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 403
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 95  NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 132


>SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)
          Length = 212

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 290 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 403
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 9   NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 46


>SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)
          Length = 735

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 290 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 403
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 532 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 569


>SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)
          Length = 1130

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 340 TAHTFQGICCHWRQQRSYW 396
           TA  +  ICCH +Q + +W
Sbjct: 486 TADQYDAICCHTQQSKKFW 504


>SB_45835| Best HMM Match : TLD (HMM E-Value=0.4)
          Length = 174

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +3

Query: 156 KSGFLSPNSAVLFAKEKSTNSRAFTCFLYQSKNSRSL 266
           KSG L     ++F  E   +S+AF C LY +KN  SL
Sbjct: 56  KSGRLGGMPNIVFNSEYQWSSKAFLCTLY-NKNGYSL 91


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,123,393
Number of Sequences: 59808
Number of extensions: 229724
Number of successful extensions: 682
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)