Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0077
         (424 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X69120-1|CAA48872.1|  267|Drosophila melanogaster ribosoaml prot...   181   4e-46
U01335-1|AAA87053.1|  267|Drosophila melanogaster ribosomal prot...   181   4e-46
U01334-1|AAC34198.1|  267|Drosophila melanogaster ribosomal prot...   181   4e-46
AY094799-1|AAM11152.1|  267|Drosophila melanogaster LD24077p pro...   181   4e-46
AE014134-1713|AAF52822.1|  267|Drosophila melanogaster CG5920-PA...   181   4e-46
BT029103-1|ABJ17036.1|  823|Drosophila melanogaster IP14290p pro...    31   0.84 
AE014297-4030|AAF56644.2| 1958|Drosophila melanogaster CG5521-PA...    31   0.84 
AE013599-325|AAF59274.2| 1307|Drosophila melanogaster CG11101-PA...    28   5.9  

>X69120-1|CAA48872.1|  267|Drosophila melanogaster ribosoaml protein
           S2 protein.
          Length = 267

 Score =  181 bits (440), Expect = 4e-46
 Identities = 86/94 (91%), Positives = 87/94 (92%)
 Frame = +2

Query: 143 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 322
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFEIIDFFLG SL DEVLKIMPVQ
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQ 96

Query: 323 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCXKEV 424
           KQTRAGQRTRFKAFVAIGDNNGHIGLGVKC KEV
Sbjct: 97  KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 130


>U01335-1|AAA87053.1|  267|Drosophila melanogaster ribosomal protein
           S2 protein.
          Length = 267

 Score =  181 bits (440), Expect = 4e-46
 Identities = 86/94 (91%), Positives = 87/94 (92%)
 Frame = +2

Query: 143 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 322
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFEIIDFFLG SL DEVLKIMPVQ
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQ 96

Query: 323 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCXKEV 424
           KQTRAGQRTRFKAFVAIGDNNGHIGLGVKC KEV
Sbjct: 97  KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 130


>U01334-1|AAC34198.1|  267|Drosophila melanogaster ribosomal protein
           S2 protein.
          Length = 267

 Score =  181 bits (440), Expect = 4e-46
 Identities = 86/94 (91%), Positives = 87/94 (92%)
 Frame = +2

Query: 143 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 322
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFEIIDFFLG SL DEVLKIMPVQ
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQ 96

Query: 323 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCXKEV 424
           KQTRAGQRTRFKAFVAIGDNNGHIGLGVKC KEV
Sbjct: 97  KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 130


>AY094799-1|AAM11152.1|  267|Drosophila melanogaster LD24077p
           protein.
          Length = 267

 Score =  181 bits (440), Expect = 4e-46
 Identities = 86/94 (91%), Positives = 87/94 (92%)
 Frame = +2

Query: 143 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 322
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFEIIDFFLG SL DEVLKIMPVQ
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQ 96

Query: 323 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCXKEV 424
           KQTRAGQRTRFKAFVAIGDNNGHIGLGVKC KEV
Sbjct: 97  KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 130


>AE014134-1713|AAF52822.1|  267|Drosophila melanogaster CG5920-PA
           protein.
          Length = 267

 Score =  181 bits (440), Expect = 4e-46
 Identities = 86/94 (91%), Positives = 87/94 (92%)
 Frame = +2

Query: 143 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 322
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFEIIDFFLG SL DEVLKIMPVQ
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQ 96

Query: 323 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCXKEV 424
           KQTRAGQRTRFKAFVAIGDNNGHIGLGVKC KEV
Sbjct: 97  KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 130


>BT029103-1|ABJ17036.1|  823|Drosophila melanogaster IP14290p
           protein.
          Length = 823

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -3

Query: 149 LPCRAHDHGRDHDRVHEDRRGLYLHRVIRIRREN-RHVHRLEQRPPLLN 6
           L C  H    D  R+H  ++GL +  V+ + REN   VH + ++  LLN
Sbjct: 359 LDCTLHIEDVDQVRLHGYQQGLIVRDVLYVNRENINFVHEVYRQAFLLN 407


>AE014297-4030|AAF56644.2| 1958|Drosophila melanogaster CG5521-PA
           protein.
          Length = 1958

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -3

Query: 149 LPCRAHDHGRDHDRVHEDRRGLYLHRVIRIRREN-RHVHRLEQRPPLLN 6
           L C  H    D  R+H  ++GL +  V+ + REN   VH + ++  LLN
Sbjct: 325 LDCTLHIEDVDQVRLHGYQQGLIVRDVLYVNRENINFVHEVYRQAFLLN 373


>AE013599-325|AAF59274.2| 1307|Drosophila melanogaster CG11101-PA
           protein.
          Length = 1307

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 160 VGSCHQTRPSCSRRKNRQTREHLLVFFTNQRI 255
           V SCH  RP  SRRK+R+    ++ F    R+
Sbjct: 816 VSSCH-CRPGYSRRKHREPCRRVISFHLGMRV 846


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,383,421
Number of Sequences: 53049
Number of extensions: 335175
Number of successful extensions: 2153
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1656
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1292733852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)