Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0077
(424 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 160 4e-40
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 153 4e-38
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 153 4e-38
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 153 4e-38
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 153 4e-38
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 151 1e-37
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 39 0.001
At5g35970.1 68418.m04332 DNA-binding protein, putative similar t... 27 5.2
At5g47430.1 68418.m05844 expressed protein 27 6.9
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 27 6.9
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 27 6.9
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 27 6.9
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 26 9.1
At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 26 9.1
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 160 bits (388), Expect = 4e-40
Identities = 69/92 (75%), Positives = 84/92 (91%)
Frame = +2
Query: 149 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 328
++++WVPVTKLGRLV+EGKI K+E IYL SLP+KE++IID +GPSL DEV+KIMPVQKQ
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQ 100
Query: 329 TRAGQRTRFKAFVAIGDNNGHIGLGVKCXKEV 424
TRAGQRTRFKAF+ +GD+NGH+GLGVKC KEV
Sbjct: 101 TRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEV 132
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 153 bits (372), Expect = 4e-38
Identities = 68/92 (73%), Positives = 80/92 (86%)
Frame = +2
Query: 149 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 328
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108
Query: 329 TRAGQRTRFKAFVAIGDNNGHIGLGVKCXKEV 424
TRAGQRTRFKAFV +GD NGH+GLGVKC KEV
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEV 140
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 153 bits (372), Expect = 4e-38
Identities = 68/92 (73%), Positives = 80/92 (86%)
Frame = +2
Query: 149 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 328
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108
Query: 329 TRAGQRTRFKAFVAIGDNNGHIGLGVKCXKEV 424
TRAGQRTRFKAFV +GD NGH+GLGVKC KEV
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEV 140
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 153 bits (372), Expect = 4e-38
Identities = 68/92 (73%), Positives = 80/92 (86%)
Frame = +2
Query: 149 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 328
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108
Query: 329 TRAGQRTRFKAFVAIGDNNGHIGLGVKCXKEV 424
TRAGQRTRFKAFV +GD NGH+GLGVKC KEV
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEV 140
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 153 bits (372), Expect = 4e-38
Identities = 68/92 (73%), Positives = 80/92 (86%)
Frame = +2
Query: 149 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 328
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108
Query: 329 TRAGQRTRFKAFVAIGDNNGHIGLGVKCXKEV 424
TRAGQRTRFKAFV +GD NGH+GLGVKC KEV
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEV 140
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 151 bits (367), Expect = 1e-37
Identities = 66/92 (71%), Positives = 80/92 (86%)
Frame = +2
Query: 149 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 328
++++WVPVTKLGRLV G I ++E IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQ 109
Query: 329 TRAGQRTRFKAFVAIGDNNGHIGLGVKCXKEV 424
TRAGQRTRFKAFV +GD NGH+GLGVKC KEV
Sbjct: 110 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEV 141
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 39.1 bits (87), Expect = 0.001
Identities = 15/44 (34%), Positives = 28/44 (63%)
Frame = +2
Query: 293 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCXKEV 424
+ V+++ V K + G++ +F+A V +GD G++G+G KEV
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEV 192
>At5g35970.1 68418.m04332 DNA-binding protein, putative similar to
SWISS-PROT:Q60560 DNA-binding protein SMUBP-2
(Immunoglobulin MU binding protein 2, SMUBP-2)
[Mesocricetus auratus]
Length = 961
Score = 27.1 bits (57), Expect = 5.2
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -2
Query: 339 PARVCFCTGMIFRTSSFRDGPRKKSMISNSL 247
P R FC+G+ +S + PR+KS +S+ L
Sbjct: 43 PTRKVFCSGVNGGSSVTKKKPRRKSNVSDKL 73
>At5g47430.1 68418.m05844 expressed protein
Length = 879
Score = 26.6 bits (56), Expect = 6.9
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = -3
Query: 131 DHGRDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 15
+H R DR EDR + H R H HR PP
Sbjct: 718 EHDRTRDRRDEDRSRDHRHHRGETERSQHH-HRKRSEPP 755
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 26.6 bits (56), Expect = 6.9
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -3
Query: 122 RDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 15
RDHDR +DR G R R R ++R R R P
Sbjct: 130 RDHDRRRDDRGGRRSRR-SRSRSKDRSERRTRSRSP 164
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 26.6 bits (56), Expect = 6.9
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -3
Query: 122 RDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 15
RDHDR +DR G R R R ++R R R P
Sbjct: 130 RDHDRRRDDRGGRRSRR-SRSRSKDRSERRTRSRSP 164
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 26.6 bits (56), Expect = 6.9
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -3
Query: 122 RDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 15
RDHDR +DR G R R R ++R R R P
Sbjct: 130 RDHDRRRDDRGGRRSRR-SRSRSKDRSERRTRSRSP 164
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 26.2 bits (55), Expect = 9.1
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +2
Query: 359 AFVAIGDNNGHIGLGV 406
AFVA G NN H+G V
Sbjct: 149 AFVAAGSNNNHVGASV 164
>At3g18530.1 68416.m02357 expressed protein similar to unknown
protein GB:AAF24615 from [Arabidopsis thaliana]
Length = 297
Score = 26.2 bits (55), Expect = 9.1
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -2
Query: 411 HFTPKPI*PLLSPMATNALKRVRCPARVCFCTGMIFRTSSFR 286
H +P + P L P N R+R A CF +G + R + R
Sbjct: 195 HVSPALLLPKLRPCLKNKSPRIRAKASACF-SGCVPRLEAAR 235
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,270,525
Number of Sequences: 28952
Number of extensions: 154930
Number of successful extensions: 420
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 655255392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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