Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0075
         (395 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    38   0.071
UniRef50_A1S6S1 Cluster: Sensor histidine kinase precursor; n=1;...    33   2.7  
UniRef50_Q8KW41 Cluster: RC149; n=1; Ruegeria sp. PR1b|Rep: RC14...    32   4.6  
UniRef50_Q87B69 Cluster: TonB-dependent receptor; n=7; Xanthomon...    31   6.1  
UniRef50_Q0B241 Cluster: Sensor protein; n=1; Burkholderia ambif...    31   6.1  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 37.9 bits (84), Expect = 0.071
 Identities = 18/26 (69%), Positives = 21/26 (80%)
 Frame = +2

Query: 164 YCLSFFDFLLFRWVDKLTNYLVLSGY 241
           +CLS   FLL RWVD+LT +LVLSGY
Sbjct: 149 FCLS--RFLLLRWVDELTAHLVLSGY 172


>UniRef50_A1S6S1 Cluster: Sensor histidine kinase precursor; n=1;
           Shewanella amazonensis SB2B|Rep: Sensor histidine kinase
           precursor - Shewanella amazonensis (strain ATCC BAA-1098
           / SB2B)
          Length = 1046

 Score = 32.7 bits (71), Expect = 2.7
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
 Frame = +3

Query: 108 FTLDFLSKVSDIMANPVL--VIASHFLISYCLDGWXXXXXXXXXXXXGAHRHLQRKCRHL 281
           F + F   VSD +ANP+L   I   F +S    GW             AH +  R     
Sbjct: 662 FPVRFTQIVSDSLANPILNTAIQDPFQMSVPWGGWLNVEFALLDFGSSAHSYQYRMSSES 721

Query: 282 KWIVVNGI 305
           +WI +N +
Sbjct: 722 QWISLNNM 729


>UniRef50_Q8KW41 Cluster: RC149; n=1; Ruegeria sp. PR1b|Rep: RC149 -
           Ruegeria sp. PR1b
          Length = 405

 Score = 31.9 bits (69), Expect = 4.6
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = +1

Query: 61  LRACPAHLHGRCTRAFSRS 117
           LRACPAHL GR   AF R+
Sbjct: 63  LRACPAHLRGRVRTAFGRA 81


>UniRef50_Q87B69 Cluster: TonB-dependent receptor; n=7;
            Xanthomonadaceae|Rep: TonB-dependent receptor - Xylella
            fastidiosa (strain Temecula1 / ATCC 700964)
          Length = 1041

 Score = 31.5 bits (68), Expect = 6.1
 Identities = 18/45 (40%), Positives = 22/45 (48%)
 Frame = -2

Query: 148  AIISLTFDKKSSVKTRVYNARVGAQDMPAVPQALGRSFVLLFAIK 14
            A I  TFDK SS+   + NA       P V   LGR ++L F  K
Sbjct: 995  ANIGYTFDKHSSLNLAILNATDKMVAFPYVYDGLGRRYMLTFNYK 1039


>UniRef50_Q0B241 Cluster: Sensor protein; n=1; Burkholderia
           ambifaria AMMD|Rep: Sensor protein - Burkholderia
           cepacia (strain ATCC 53795 / AMMD)
          Length = 737

 Score = 31.5 bits (68), Expect = 6.1
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +3

Query: 33  TNERPSAC-GTAGMSCAPTRALYTRVFTLDFLSKVSDIMANPVLVIAS 173
           T  R SAC G A + C P   LY+ +  LD       +   PVL+ AS
Sbjct: 157 TQGRRSACAGAASLQCDPPYELYSYINVLDGRVPSDSLSGRPVLIRAS 204


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 403,713,260
Number of Sequences: 1657284
Number of extensions: 7663007
Number of successful extensions: 15101
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15100
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 16503508437
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)