Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0075
         (395 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0137 + 1005818-1006852,1007645-1007827,1008398-1008616,100...    27   7.2  
02_05_1351 - 35855543-35856751                                         27   7.2  
01_06_1536 + 38075023-38075359,38075834-38075963,38076204-380764...    27   7.2  
01_01_0615 - 4576554-4576560,4577808-4577824,4578776-4578911,457...    27   7.2  
12_02_0318 - 17457182-17462232,17462745-17462955,17463356-174634...    26   9.6  
07_01_0146 - 1068314-1068656,1069349-1069507,1069642-1069835           26   9.6  
05_01_0548 - 4778099-4778121,4780881-4781661                           26   9.6  

>07_01_0137 +
           1005818-1006852,1007645-1007827,1008398-1008616,
           1008682-1008690
          Length = 481

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 145 WRTRSWLLPLIF*FPIV*MGGQAHELPSVKWL 240
           W+T   LL  +    I  + G  HE+  VKWL
Sbjct: 423 WKTEELLLKFLHEVEINNLRGTGHEIALVKWL 454


>02_05_1351 - 35855543-35856751
          Length = 402

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 205 GQAHELPSVKWLPEP 249
           G ++ LP+V WLPEP
Sbjct: 89  GASYNLPAVLWLPEP 103


>01_06_1536 +
           38075023-38075359,38075834-38075963,38076204-38076419,
           38076520-38077137,38077226-38078075
          Length = 716

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +2

Query: 47  ECLWDCGHV-LRTYTGVVHARFHARLFIESE*YNGEPGPGYCLSFFDFLLFRWVDKLTNY 223
           E L +CG++ L   T ++HA  HA  +      NG  G   CL+  D + F W D+L   
Sbjct: 167 EELEECGYMHLDDNTHLLHAVVHANGYGHLLRVNGREGGSRCLTGRDIMSF-W-DRLCKV 224

Query: 224 L 226
           L
Sbjct: 225 L 225


>01_01_0615 -
           4576554-4576560,4577808-4577824,4578776-4578911,
           4579488-4579543,4580540-4580635,4580864-4580927,
           4581022-4581077,4581170-4581249,4581778-4581842,
           4581970-4582177,4582889-4583447
          Length = 447

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 113 RENARVQRPCRCAGHA 66
           RE ARV+  C CA HA
Sbjct: 161 REEARVEEECPCASHA 176


>12_02_0318 - 17457182-17462232,17462745-17462955,17463356-17463403,
            17466161-17466346
          Length = 1831

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 110  HARLFIESE*YNGEPGPGYCLSFFDFLLFRWVDKLTNYL 226
            + RL+I  +     P P  C +FF+F+   W  ++  YL
Sbjct: 1538 YCRLWIMWQNSKSTPTPKDCAAFFEFVDKNWNTEIGKYL 1576


>07_01_0146 - 1068314-1068656,1069349-1069507,1069642-1069835
          Length = 231

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 78  APTRALYTRVFTLDFLSKVSDIMANPVLVI 167
           APT  L+  +FT   LSK     A P +++
Sbjct: 77  APTAELFDAIFTATILSKTVQTAAGPKMMV 106


>05_01_0548 - 4778099-4778121,4780881-4781661
          Length = 267

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -1

Query: 104 ARVQRPCRCAGHARSPTSTRALVCF 30
           A   RPC C    RSPTS   L  F
Sbjct: 41  AAAARPCECDSPVRSPTSPLDLRAF 65


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,835,740
Number of Sequences: 37544
Number of extensions: 214741
Number of successful extensions: 487
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)