Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0075
         (395 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10633| Best HMM Match : LMWPc (HMM E-Value=0.64)                    29   1.4  
SB_25422| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  

>SB_10633| Best HMM Match : LMWPc (HMM E-Value=0.64)
          Length = 377

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = -2

Query: 391 SLRKKKSIYFRSRSQLRLQVV*RYANHLTIPLTTIHFRWRHLRCRCLWAPV 239
           S   K  + FR  +Q+R++V     + +T+P    + R R +  R +W  V
Sbjct: 271 SFESKMVVSFRVGNQMRVEVAKGSGSWITVPENATNIRVRFMANRLVWCDV 321


>SB_25422| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 258

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
 Frame = -3

Query: 213 SLSTHLNNRKSKNERQ*PG----PGSPLYHSLSIKSRA*KRACTTPV*VRRTCPQSHKHS 46
           SL +H   +K+K + + P     P SP  +S+S+       + TTPV +++ CP  ++ S
Sbjct: 165 SLESHEQEKKAKKKNKQPKIKHEPESPKQNSMSM-------SITTPVNLKQECPTDYQSS 217


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,629,899
Number of Sequences: 59808
Number of extensions: 251279
Number of successful extensions: 565
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 690807992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)