Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0075
         (395 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   5.1  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    20   9.0  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    20   9.0  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 394 SSLRKKKSIYFRSRSQ 347
           +SLR  KSIY R  S+
Sbjct: 46  NSLRNHKSIYHRQHSK 61


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -2

Query: 337 QVV*RYANHLTIPLTTIHFRWRHLRCRC 254
           Q V  + +HL +P   I+ +   L C C
Sbjct: 37  QAVNGHCSHLCLPAPRINSKSPLLSCAC 64


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -2

Query: 337 QVV*RYANHLTIPLTTIHFRWRHLRCRC 254
           Q V  + +HL +P   I+ +   L C C
Sbjct: 37  QAVNGHCSHLCLPAPRINSKSPLLSCAC 64


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,321
Number of Sequences: 438
Number of extensions: 2486
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)