Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0073
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa...    28   1.3  
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   4.1  
SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces...    25   7.2  
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    25   9.5  
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    25   9.5  
SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr 3...    25   9.5  

>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 589

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 345 TLFRFYLLLPFHISLINVIKY*YALTQLLENSYTSSANASLDFMNIASFIS 497
           T+F  Y   PF I  +N+I      T++  N   +   A +D++N A  +S
Sbjct: 259 TMFSCYCEEPFTIEPVNIISEHNGCTRVTPNLNPTCFKADIDYLNEACGLS 309


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = -3

Query: 240 IYFPTFFLPQVSTISRKVLRSNRQPGDDSAILIYGILGLLKSTLLSFHYQEKEQGVF 70
           IY    F+PQ   + R        P  +  +L+  I+G+ K  + S    EK  GVF
Sbjct: 460 IYVREAFVPQNHPVLRAPSLFTDSPTYEDMLLLNSIIGIEKPPVASQKDLEKAGGVF 516


>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 476 EYCKFH*FQSKI*IEVHSTLHTFRFYCRIPNV 571
           EY + H  Q K+ +E H T     FY ++P+V
Sbjct: 166 EYTQQHLVQCKMVLENHITSRFPHFYTKLPDV 197


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 16/38 (42%), Positives = 17/38 (44%)
 Frame = -1

Query: 293 ELFKFEFTEIRLCIYLPSFIFQPFFCPRFLRYRERFYA 180
           ELF     E  L   LPS  FQP F    L  +E  YA
Sbjct: 380 ELFSQITREASLLYCLPSTDFQPLFVSEKLSIQEVTYA 417


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 2  VWVVLDWLIVAVGA 43
          VW VL W++ AVGA
Sbjct: 15 VWHVLSWILYAVGA 28


>SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 227

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 271 QKYDYVFTYLHLFSNLFSAPGFYD 200
           Q YDY +T  + F+    A GFYD
Sbjct: 11  QYYDYSYTADNSFNTQSRAAGFYD 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,340,864
Number of Sequences: 5004
Number of extensions: 44666
Number of successful extensions: 83
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)