Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0072
(689 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 34 0.017
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 33 0.051
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.12
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 29 0.48
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 29 0.48
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 29 0.63
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy... 29 0.84
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 28 1.1
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 28 1.1
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 28 1.5
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 28 1.5
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha... 27 2.6
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.6
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p... 27 2.6
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 26 4.5
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 26 4.5
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 26 5.9
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 26 5.9
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 26 5.9
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.8
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po... 25 7.8
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 25 7.8
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 23 8.0
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 34.3 bits (75), Expect = 0.017
Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 1/129 (0%)
Frame = +2
Query: 278 SAERGHSLSPQSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPDLPTTESPASAC 457
S+E + S QS +T + KT A+ T T + SA + T ++ +A
Sbjct: 226 SSESTIANSDQSSFITYESTQNPTANKTDASQQSTESTSS--SASAYSYITTLQTATTAQ 283
Query: 458 GLIRFRSAKTKK*Q-TDSAAQPPVRSPTLARSAVTLIPKIAVNITSVSRALPASTVAPSE 634
+ T T S P + S + S + P +A++ +S + AST A +
Sbjct: 284 QTTSENTYSTSGPNLTTSNTSPQISSTISSSSFIVESPSVALSTSSTTTITNASTPAANT 343
Query: 635 PFSRSETPT 661
SRS PT
Sbjct: 344 IISRSSKPT 352
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 32.7 bits (71), Expect = 0.051
Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 8/144 (5%)
Frame = +2
Query: 275 LSAERGHSLSPQSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPDLPTTESPASA 454
+S S+ PQS +ASS T +T S +S + +P+T S +
Sbjct: 468 VSVPSSSSVQPQSSTPISSSSSASSPQSTLSTSSEVVSEVSSTLLSGSSAIPSTSSSTPS 527
Query: 455 CGLIRFRSAKTKK*QTDSAAQPPVRSPTLARSAVTLIPKIAVN-----ITSVSRALPAST 619
+I S+ + S++ P S + S T+ I+ + +SVS L +ST
Sbjct: 528 SSII---SSPMTSVLSSSSSIPTSSSSDFSSSITTISSGISSSSIPSTFSSVSSILSSST 584
Query: 620 VAPSE---PFSRSETPTALVTAKT 682
+PS S S T + +A T
Sbjct: 585 SSPSSTSLSISSSSTSSTFSSAST 608
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 31.5 bits (68), Expect = 0.12
Identities = 35/163 (21%), Positives = 71/163 (43%), Gaps = 6/163 (3%)
Frame = +2
Query: 215 SLSTPQIPNXXXXXXXXXXXLSAERGHSL----SPQSPLLTVRDCTASSLMKTSATFSGT 382
SLST IP+ LS+ S S S +++ ++SS TS+T S +
Sbjct: 234 SLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSS 293
Query: 383 AGTEKPPAISAAPDLPTTESPASACGLIRFRSAKTKK*QTDSAAQPPVRSPTLARSAVTL 562
+ + P +++ ++ S +S + S+ + + ++ P S T++ S+ +
Sbjct: 294 SSSSSSPTSTSSTISSSSSSSSSFSSTL---SSSSMSSSSSFSSSPTSSSSTISSSSSSP 350
Query: 563 IPKIAVNITSVSRALP--ASTVAPSEPFSRSETPTALVTAKTP 685
+ TS S++ +STV+ S S S ++ ++ P
Sbjct: 351 SSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRP 393
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 29.5 bits (63), Expect = 0.48
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
Frame = +2
Query: 389 TEKPPAISAAPDLPTTESPASACGLIRFRSAKTKK*QTDSAAQPPVRSPT-LARSAVTLI 565
T P S +LPT + S +S + QT +PP SPT + ++ ++
Sbjct: 135 TTFPSTTSITENLPTIDPTRSTRSSSHIQSLSPESKQTSDGHRPP--SPTSITTTSTSID 192
Query: 566 PKIAVNITSVSRALPASTVAPSEPFSRSETPT 661
P +A + S +T + P SR PT
Sbjct: 193 PSVAFSSKST-----LATTRTNAPLSRPSQPT 219
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 29.5 bits (63), Expect = 0.48
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +2
Query: 518 PPVRSPTLARSAVTLIPKIAVNITSVSRALPASTVAPSEPFSRSETPTALVTAKTP 685
P +RS +L S V LIP + + + S + PAS P S S + + V + P
Sbjct: 439 PSIRSLSLRPSQVPLIPPLKCDPNAFSASTPASGAVSRTPSSVSLSSLSNVNSSMP 494
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 29.1 bits (62), Expect = 0.63
Identities = 30/126 (23%), Positives = 53/126 (42%)
Frame = +2
Query: 290 GHSLSPQSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPDLPTTESPASACGLIR 469
GH+ + S T TA+S + +SAT S T+ + + D+ T PAS+
Sbjct: 141 GHASASTSIPSTAITVTANSTIYSSATSSFPYSTDVSVSTGTSTDIVTLPPPASSTSSFS 200
Query: 470 FRSAKTKK*QTDSAAQPPVRSPTLARSAVTLIPKIAVNITSVSRALPASTVAPSEPFSRS 649
T + S+ SP S + +P ++ S +L +S+V P+ + +
Sbjct: 201 -TITNTSMIPSSSSFTTTTGSPYYNTS--SFLPSSVIS----SASLSSSSVLPTSIITST 253
Query: 650 ETPTAL 667
TP +
Sbjct: 254 STPVTV 259
Score = 25.4 bits (53), Expect = 7.8
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 11/73 (15%)
Frame = +2
Query: 500 TDSAAQPPVRSPTLARSAVT---LIPKIAVNITSV-------SRALPASTVAPSEPFSRS 649
TD PP S T + S +T +IP + T+ S LP+S ++ + S S
Sbjct: 184 TDIVTLPPPASSTSSFSTITNTSMIPSSSSFTTTTGSPYYNTSSFLPSSVISSASLSSSS 243
Query: 650 ETPTALVTA-KTP 685
PT+++T+ TP
Sbjct: 244 VLPTSIITSTSTP 256
>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 28.7 bits (61), Expect = 0.84
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = -1
Query: 689 SSGSSQLPVPSASPILKTVPMGQP 618
S+ S++LPVPS +PIL T P+ P
Sbjct: 51 STLSNKLPVPSTNPILTTEPIVGP 74
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 28.3 bits (60), Expect = 1.1
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 1/107 (0%)
Frame = +2
Query: 347 SLMKTSATFSGTAGTEKPPAISAAPDLPTTESPASACGLIRFRSAKTKK*QTDSAAQPPV 526
++M T+A + +A T A+ D+ ++ + S+ ++ T T AA V
Sbjct: 139 TVMYTTAVYGDSATTPAASEAQASSDILSSLASLSSASTDNLAASVTP---TTVAAS--V 193
Query: 527 RSPTLARSAVTLIPKIAVNITS-VSRALPASTVAPSEPFSRSETPTA 664
S SA I + + TS VS +P+S ++ + P S SE+ A
Sbjct: 194 ASSVDTDSASATISSVVDSATSSVSTVIPSSIISAAPPDSASESTPA 240
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Frame = +1
Query: 148 ISCDKYWKCDN----GVAELKTCGNGLAFDATDS--KYLTENCDYLHN 273
+ CD+ W C+N G+ L C NG+ +D K L D L N
Sbjct: 30 LKCDRVWPCENCKKRGIPNL--CPNGILVSVSDKLIKLLLSRIDTLQN 75
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.9 bits (59), Expect = 1.5
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 3/100 (3%)
Frame = +2
Query: 359 TSATFSGTAGTEKPPAISAAPDLPTTESPASACGLIRFRSAKTKK*QTDSAAQPPVRSPT 538
TS+ F+ T+G P + ++ P +T +P S F + T T SA+ P S
Sbjct: 621 TSSGFNTTSGL--PTSSASTPLSNSTVAPTSTFTSSGFNT--TSGLPTSSASTPSSNSSI 676
Query: 539 LARSAVT---LIPKIAVNITSVSRALPASTVAPSEPFSRS 649
+ S T + +S S L STVAP+ F+ S
Sbjct: 677 VPTSTFTSSGFNTTSGLPTSSASTPLSNSTVAPTSTFTSS 716
Score = 26.6 bits (56), Expect = 3.4
Identities = 27/115 (23%), Positives = 53/115 (46%)
Frame = +2
Query: 338 TASSLMKTSATFSGTAGTEKPPAISAAPDLPTTESPASACGLIRFRSAKTKK*QTDSAAQ 517
T+SSL +SAT S A + + A+ + ++ +S+ S+ T S++
Sbjct: 105 TSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTSSSLASSST 164
Query: 518 PPVRSPTLARSAVTLIPKIAVNITSVSRALPASTVAPSEPFSRSETPTALVTAKT 682
S T SA + +++ T+ S + +S++A S S + T +A T+ +
Sbjct: 165 NSTTSATPTSSATS----SSLSSTAASNSATSSSLASS---SLNSTTSATATSSS 212
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 27.9 bits (59), Expect = 1.5
Identities = 22/97 (22%), Positives = 45/97 (46%)
Frame = +2
Query: 374 SGTAGTEKPPAISAAPDLPTTESPASACGLIRFRSAKTKK*QTDSAAQPPVRSPTLARSA 553
S A + + A SA +PT+ S + ++ S SAA V +P ++ +A
Sbjct: 202 SSVASSSEISAGSATSYVPTSSSSIALSSVVASASV--------SAANKGVSTPAVSSAA 253
Query: 554 VTLIPKIAVNITSVSRALPASTVAPSEPFSRSETPTA 664
+ ++ ++S + +ST++ + S S +PT+
Sbjct: 254 ASSSAVVSSVVSSATSVAASSTISSATSSSASASPTS 290
>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 203
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 299 LSPQSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAP 421
L+ Q+PL + D A+ + +T G+AGT + A+ +P
Sbjct: 102 LTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSP 142
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.1 bits (57), Expect = 2.6
Identities = 29/128 (22%), Positives = 46/128 (35%), Gaps = 3/128 (2%)
Frame = +2
Query: 311 SPLLTVR-DCTASSLMKTSATFSGTAGTEKPPAISAAPDLPTTESPASACGLIRFRSAKT 487
SPL T CT S+ + + + PP +++ P + S+ G T
Sbjct: 276 SPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPST 335
Query: 488 KK*QTDSAAQPPVRSPTLARSAVTLIPKIAVNITSV--SRALPASTVAPSEPFSRSETPT 661
T S + PP + T +P + + TS A +ST S P + T
Sbjct: 336 STSCTTSTSIPPTGNST--TPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSC 393
Query: 662 ALVTAKTP 685
T+ P
Sbjct: 394 TTSTSIPP 401
Score = 27.1 bits (57), Expect = 2.6
Identities = 37/169 (21%), Positives = 56/169 (33%)
Frame = +2
Query: 176 TTV*PN*KPAATVSLSTPQIPNXXXXXXXXXXXLSAERGHSLSPQSPLLTVRDCTASSLM 355
T V P P +T S STP P ++ G S SP T CT S+ +
Sbjct: 299 TPVTPTVPPTSTSSTSTPPPPAS-----------TSSTGTSSSPLPSTST--SCTTSTSI 345
Query: 356 KTSATFSGTAGTEKPPAISAAPDLPTTESPASACGLIRFRSAKTKK*QTDSAAQPPVRSP 535
+ + PP +++ P + S+ G T T S + PP +
Sbjct: 346 PPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNS 405
Query: 536 TLARSAVTLIPKIAVNITSVSRALPASTVAPSEPFSRSETPTALVTAKT 682
T +P + + + ST P + TP A T
Sbjct: 406 T--TPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTT 452
>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 299 LSPQSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAP 421
L+ Q+PL + D A+ + +T G+AGT + A+ +P
Sbjct: 102 LTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSP 142
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 4.5
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +2
Query: 503 DSAAQPPVRSPTLARSAV-TLIPKIAVNITSVSRALPASTVAPSEPFS 643
+S+AQ P A SA T P TS AST++PS PFS
Sbjct: 349 NSSAQSPHPRVFSANSAFSTTSPPPLTPSTSRDYPFSASTISPSTPFS 396
>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 459
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +1
Query: 172 CDNGVAELKTCGNGLAFDATDSKYLTENCDYLHNVEC 282
C N V LK NG + S+ L+E C Y N C
Sbjct: 374 CSNAVKNLKCSANGTPSGSKISQVLSELC-YYDNKAC 409
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 25.8 bits (54), Expect = 5.9
Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 1/101 (0%)
Frame = +2
Query: 335 CTASSLMKTSATFSG-TAGTEKPPAISAAPDLPTTESPASACGLIRFRSAKTKK*QTDSA 511
C SSL KT + TA P I+ ++ + L+R K+ D+
Sbjct: 314 CELSSLSKTDISLPFITADATGPKHINM--EISRAQFEKLVDPLVRRTIDPCKRALKDAN 371
Query: 512 AQPPVRSPTLARSAVTLIPKIAVNITSVSRALPASTVAPSE 634
Q + + +T +P++ + S+ + PA +V P E
Sbjct: 372 LQTSEINEVILVGGMTRMPRVVETVKSIFKREPAKSVNPDE 412
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 25.8 bits (54), Expect = 5.9
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = +2
Query: 569 KIAVNITSVSRALP---ASTVAPSEPFSRSETPTA 664
KI +T +P AS+ PSE SR+ETPTA
Sbjct: 478 KIVNPVTHTEVVVPQKNASSPNPSETNSRAETPTA 512
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 25.8 bits (54), Expect = 5.9
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +2
Query: 308 QSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPDLPTTESPASA 454
Q+ T T ++ ++T+ +GTAGTE A +A PTT + +A
Sbjct: 1191 QATTATETQATTATEVQTTTGATGTAGTE-TQATTATEVQPTTGATGTA 1238
Score = 25.8 bits (54), Expect = 5.9
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +2
Query: 308 QSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPDLPTTESPASA 454
Q+ T T ++ ++T+ +GTAGTE A +A PTT + +A
Sbjct: 1273 QATTATETQATTATEVQTTTGATGTAGTE-TQATTATEVQPTTGATGTA 1320
>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 500 TDSAAQPPVRSPTLARSAV 556
++SAA PPV SP L RS +
Sbjct: 479 SNSAASPPVSSPGLRRSHI 497
>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 472
Score = 25.4 bits (53), Expect = 7.8
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +1
Query: 346 FPDENKCDVFWNCW 387
F D N D +WNCW
Sbjct: 350 FADRNFYDDWWNCW 363
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 25.4 bits (53), Expect = 7.8
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 530 SPTLARSAVTLIPKIAVNITSVSRALPASTVAPSEPFSRSETPTA 664
S A S T P A + T VS+ + AST +EP ++ TP++
Sbjct: 316 SADTAGSPATSPPATADSKTIVSKTISASTTQQTEPLQQT-TPSS 359
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 23.0 bits (47), Expect(2) = 8.0
Identities = 19/63 (30%), Positives = 24/63 (38%)
Frame = +2
Query: 476 SAKTKK*QTDSAAQPPVRSPTLARSAVTLIPKIAVNITSVSRALPASTVAPSEPFSRSET 655
S T T A + P P L +PK+ S + A P S AP P S
Sbjct: 81 SLPTSSNNTQQAEERP-SMPALGGLFAGGMPKLRHIGKSSASAAPPSAPAPPTPQSELRP 139
Query: 656 PTA 664
PT+
Sbjct: 140 PTS 142
Score = 20.6 bits (41), Expect(2) = 8.0
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +2
Query: 398 PPAISAAPDLPTTES 442
PP + AP LPT+ +
Sbjct: 73 PPVPTGAPSLPTSSN 87
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,820,028
Number of Sequences: 5004
Number of extensions: 58322
Number of successful extensions: 223
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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