Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0071
         (416 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    21   3.6  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    21   4.8  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   6.4  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    20   8.4  

>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 14/40 (35%), Positives = 16/40 (40%)
 Frame = +2

Query: 200 NLFQVAAHEFGHSLGLSHSDVRSALMAPFYRGYDPAFQLD 319
           NL QVA   +G    L      S  +  FY  YD  F  D
Sbjct: 223 NLCQVANSIYGFQNFLFVLSTFSICITQFYYCYDSGFNSD 262


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -1

Query: 287 KTAPSMRILHRC 252
           +  P MR+LH+C
Sbjct: 186 RAKPPMRVLHQC 197


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 99  VQEAPSPTLISRCMEVMPILMTLRCGPSI 185
           V++ PSP   S C +    +  L   PS+
Sbjct: 168 VKKLPSPASDSECFDRRKFISALVNAPSV 196


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 14/51 (27%), Positives = 20/51 (39%)
 Frame = -2

Query: 172 HLSVIKMGITSIHREISVGEGASWTIKRISVTVLAFLKPNFYVDLTGSLLC 20
           H+  I+   T   R++    GA W    I   VLA  +   Y+     L C
Sbjct: 456 HVFAIREAATLNLRKLVDQFGAEWAETTIIPKVLAMSRDQNYLYRMTCLFC 506


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,078
Number of Sequences: 336
Number of extensions: 1993
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9174063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)