Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0071
         (416 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    25   3.6  
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr...    25   6.2  
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe...    25   6.2  
SPBC18E5.05c |||RNA polymerase II elongator complex subunit|Schi...    24   8.2  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    24   8.2  

>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +2

Query: 212 VAAHEFGHSLGLSH 253
           V AHE GH LGL H
Sbjct: 226 VVAHEIGHILGLIH 239


>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 568

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 229 KLMRCYLEKISSSTGIDGPHLSVIKMGI 146
           KL+  YL+K+++  GID P +   K+ +
Sbjct: 374 KLVHNYLDKLANFQGIDVPLIQKTKIAV 401


>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 295

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +2

Query: 212 VAAHEFGHSLGLSHSDVRSALMAPFYRGYDPAFQLDQDDVQ 334
           V+ +E G++L     + +     P Y  Y P+F++D++ VQ
Sbjct: 161 VSIYETGNTLLSQKEEYKPE--KPIYGDYMPSFEVDEEKVQ 199


>SPBC18E5.05c |||RNA polymerase II elongator complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = -3

Query: 219 AATWKRLVPLRELMDHISA 163
           A +W+++  L+EL +HIS+
Sbjct: 67  ATSWEKVKSLKELYEHISS 85


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 120 TLISRCMEVMPILMTLRCGPSIPVEELIFSR 212
           T+I     ++ IL ++ CG + PV+  +F+R
Sbjct: 788 TMIEIICLLIGILASMICGAAYPVQAAVFAR 818


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,726,028
Number of Sequences: 5004
Number of extensions: 33714
Number of successful extensions: 89
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)