Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0071
(416 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0697 - 30999644-31000762 76 1e-14
10_08_0901 - 21443224-21444085,21444804-21444998,21445189-214452... 71 4e-13
06_01_0940 + 7235801-7236916 70 9e-13
10_08_0900 - 21436508-21437521 66 8e-12
09_01_0155 - 2301903-2302151,2302334-2302491,2302651-2302819,230... 29 1.1
12_01_0971 - 9781887-9781924,9782036-9782247,9782327-9784114,978... 28 3.5
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 28 3.5
01_06_0106 - 26516930-26517349,26517474-26517905,26517981-265180... 27 4.6
12_01_0974 - 9808192-9808455,9809023-9809172,9810892-9811488 27 6.0
04_04_0523 - 25900802-25902548,25902640-25903037 27 6.0
01_06_0026 + 25738960-25739075,25740385-25740733,25740825-25741511 27 8.0
>02_05_0697 - 30999644-31000762
Length = 372
Score = 75.8 bits (178), Expect = 1e-14
Identities = 52/124 (41%), Positives = 60/124 (48%), Gaps = 9/124 (7%)
Frame = +2
Query: 11 LTFTQKRSGQ-VHIEIRFEKGEHXXXXXXXXXXXTLAHAYFPVYGGDAHFDDAEMW---- 175
L FT+ S I I F G+H TLAHA+ P G H D AE W
Sbjct: 201 LQFTEVSSASNADITIGFYSGDHGDGEAFDGPLGTLAHAFSPT-DGRFHLDAAEAWVASG 259
Query: 176 --SINSRRGT--NLFQVAAHEFGHSLGLSHSDVRSALMAPFYRGYDPAFQLDQDDVQGIQ 343
S +S GT +L VA HE GH LGL HS V ++M P R L+ DDV GIQ
Sbjct: 260 DVSTSSSFGTAVDLESVAVHEIGHLLGLGHSSVPDSIMYPTIRTGTRKVDLESDDVLGIQ 319
Query: 344 SLYG 355
SLYG
Sbjct: 320 SLYG 323
>10_08_0901 -
21443224-21444085,21444804-21444998,21445189-21445259,
21446293-21447094,21447687-21447723,21448270-21449023
Length = 906
Score = 70.9 bits (166), Expect = 4e-13
Identities = 38/86 (44%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Frame = +2
Query: 113 LAHAYFPVYGGDAHFDDAEMWSINSRRGT-----NLFQVAAHEFGHSLGLSHSDVRSALM 277
LAH+ P G H A W++N T +L VAAHE GH LGL HS RS++M
Sbjct: 401 LAHSSMPEKSGQIHLHAAHRWTVNLAADTAPLAVDLESVAAHEIGHVLGLDHSSSRSSMM 460
Query: 278 APFYRGYDPAFQLDQDDVQGIQSLYG 355
PF + +L DDV GIQ LYG
Sbjct: 461 YPFISCRERKVRLTTDDVHGIQELYG 486
Score = 65.3 bits (152), Expect = 2e-11
Identities = 44/130 (33%), Positives = 63/130 (48%), Gaps = 12/130 (9%)
Frame = +2
Query: 2 LVPLTF----TQKRSGQVHIEIR---FEKGEHXXXXXXXXXXXTLAHAYFPVYGGDAHFD 160
++P++F T+ + +IR + GEH AHA P G FD
Sbjct: 98 VIPVSFAEITTEDDAAAAEADIRVGFYGAGEHGDGHPFDGPLNVYAHATGPE-DGRIDFD 156
Query: 161 DAEMWSIN-----SRRGTNLFQVAAHEFGHSLGLSHSDVRSALMAPFYRGYDPAFQLDQD 325
AE W+++ S +L VA HE GH+LGL HS S++M P+ + +L D
Sbjct: 157 AAERWAVDLAADASPAAVDLETVATHEIGHALGLDHSTSESSVMYPYVGTRERKVRLTVD 216
Query: 326 DVQGIQSLYG 355
DV+GIQ LYG
Sbjct: 217 DVEGIQELYG 226
Score = 60.5 bits (140), Expect = 5e-10
Identities = 37/92 (40%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Frame = +2
Query: 113 LAHAYFPVYGGDAHFDDAEMWSINSRRGT---------NLFQVAAHEFGHSLGLSHSDVR 265
LAHA+ P G H A W++ + G +L VA HE GH+LGL HS
Sbjct: 762 LAHAH-PPQDGRIHLHAARKWAVTNVAGAGGDAPPLAVDLESVAVHEIGHALGLGHSSSE 820
Query: 266 SALMAPFYRGYDPAFQLDQDDVQGIQSLYGHK 361
S++M YR Y L DDV+G+Q LYG K
Sbjct: 821 SSMM---YRHYRGKVSLTDDDVKGVQELYGAK 849
>06_01_0940 + 7235801-7236916
Length = 371
Score = 69.7 bits (163), Expect = 9e-13
Identities = 45/124 (36%), Positives = 54/124 (43%), Gaps = 8/124 (6%)
Frame = +2
Query: 11 LTFTQKRSG-QVHIEIRFEKGEHXXXXXXXXXXXTLAHAYFPVYGGDAHFDDAEMW---- 175
L FT+ S I I F G+H TLAHA+ P G H D +E W
Sbjct: 201 LNFTEAASAADADITIGFYGGDHGDGEAFDGPLGTLAHAFSPT-NGRLHLDASEAWVAGG 259
Query: 176 ---SINSRRGTNLFQVAAHEFGHSLGLSHSDVRSALMAPFYRGYDPAFQLDQDDVQGIQS 346
+S +L VA HE GH LGL HS ++M P L DDV GIQ
Sbjct: 260 DVTRASSNAAVDLESVAVHEIGHILGLGHSSAADSIMFPTLTSRTKKVNLATDDVAGIQG 319
Query: 347 LYGH 358
LYG+
Sbjct: 320 LYGN 323
>10_08_0900 - 21436508-21437521
Length = 337
Score = 66.5 bits (155), Expect = 8e-12
Identities = 40/127 (31%), Positives = 60/127 (47%), Gaps = 6/127 (4%)
Frame = +2
Query: 5 VPLTFTQKRSGQV-HIEIRFEKGEHXXXXXXXXXXXTLAHAYFPVYGGDAHFDDAEMWSI 181
+P+ F + + I++ F G H L HA+ P G H D +E W++
Sbjct: 174 IPVGFVETDDYEAADIKVGFYAGNHGDGVPFDGPLGILGHAFSPK-NGRLHLDASEHWAV 232
Query: 182 N-----SRRGTNLFQVAAHEFGHSLGLSHSDVRSALMAPFYRGYDPAFQLDQDDVQGIQS 346
+ + +L VA HE GH LGL HS A+M P + + +L DDV+G+Q+
Sbjct: 233 DFDVDATASAIDLESVATHEIGHVLGLGHSASPRAVMYPSIKPREKKVRLTVDDVEGVQA 292
Query: 347 LYGHKTQ 367
LYG Q
Sbjct: 293 LYGSNPQ 299
>09_01_0155 -
2301903-2302151,2302334-2302491,2302651-2302819,
2303796-2304839,2305792-2306075,2306318-2307333,
2307937-2308085
Length = 1022
Score = 29.5 bits (63), Expect = 1.1
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -2
Query: 217 CYLEKISSSTGIDGPHLSVIKM 152
C L ISSSTG+DG HL + ++
Sbjct: 379 CNLNVISSSTGLDGQHLVLFRV 400
>12_01_0971 -
9781887-9781924,9782036-9782247,9782327-9784114,
9784630-9785432
Length = 946
Score = 27.9 bits (59), Expect = 3.5
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = -2
Query: 316 ELESRIVTTIKRR--HQCGSYIAV*ETQRVTKLMRCYLEKISSSTGIDGPHLSVIKMGIT 143
EL++R++ +RR +Q +I+ + + E++ GIDGP +IK +T
Sbjct: 123 ELKNRVMEEDQRRKRNQIDDFISEPSVVEIDPRLPALYEEVERLVGIDGPREKIIKWIMT 182
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 27.9 bits (59), Expect = 3.5
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = -2
Query: 214 YLEKISSSTGIDGPHLSVIKMGITSIHREISVGEGASWTIK 92
Y++ G HL++ GI + R ++V G +W +K
Sbjct: 519 YMDLFKLYDPFGGDHLNIFAAGIKAADRLLTVSHGYAWELK 559
>01_06_0106 -
26516930-26517349,26517474-26517905,26517981-26518058,
26518352-26518499,26518662-26518765,26518838-26518912,
26519195-26519261,26519352-26519356
Length = 442
Score = 27.5 bits (58), Expect = 4.6
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +2
Query: 197 TNLFQVAAHEFGHSLGLSHSDVRSALMAPFYRGYDPA--FQLDQDDVQGI 340
+ +F +A HEFGH++ + ++ +A F P L+ D +Q +
Sbjct: 66 STVFSIAFHEFGHAVAAASEGIQIEYVAVFVAALFPGALIALNCDQLQNL 115
>12_01_0974 - 9808192-9808455,9809023-9809172,9810892-9811488
Length = 336
Score = 27.1 bits (57), Expect = 6.0
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -2
Query: 316 ELESRIVTTIKRR--HQCGSYIAV*ETQRVTKLMRCYLEKISSSTGIDGPHLSVIK 155
EL++R++ +RR +Q +I+ + + E++ GIDGP ++K
Sbjct: 123 ELKNRVMEEDQRRKRYQIDDFISEPSMVEIDPRLLALYEEVERLVGIDGPREKIVK 178
>04_04_0523 - 25900802-25902548,25902640-25903037
Length = 714
Score = 27.1 bits (57), Expect = 6.0
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -2
Query: 184 IDGPHLSVIKMGITSIHREISVGEGASWTIKRISVTVLA 68
+ G HL +K + R + EGAS TI +++ A
Sbjct: 36 LSGSHLDAVKRMVEEYRRPVVTIEGASLTIAQVAAVASA 74
>01_06_0026 + 25738960-25739075,25740385-25740733,25740825-25741511
Length = 383
Score = 26.6 bits (56), Expect = 8.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 182 NSRRGTNLFQVAAHEFGHSLGLSHSDVR 265
N RG + F VA H++G +H D+R
Sbjct: 140 NRTRGADHFLVACHDWGSYTTTAHGDLR 167
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,950,673
Number of Sequences: 37544
Number of extensions: 245920
Number of successful extensions: 673
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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