Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0070
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr...    27   1.9  
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   3.3  
SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr 2...    26   5.7  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    25   7.5  
SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase Ade2|Sc...    25   9.9  

>SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 226

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 192 NSLIGDPDVIDRYK 151
           N+LIG PD +DRYK
Sbjct: 199 NALIGHPDFVDRYK 212


>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 523 DFDESNRYIPEIIGEYLIL 467
           D+DE N Y+ E+ G+Y +L
Sbjct: 167 DWDEQNEYVSEVEGDYNLL 185


>SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 349 VLNIWR*KGIVSQTISFFPHLVR 417
           VL  WR +GI+     F PHL+R
Sbjct: 228 VLQTWRLQGILGFYKGFLPHLLR 250


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 243 VNYLKHDYGEIKKGLYTNSLIG 178
           VN++ +DY E+  G Y N +IG
Sbjct: 19  VNFVTYDYCELFPGPYLNLIIG 40


>SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase
           Ade2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -1

Query: 115 ASRQG-RVHIIYTWCSIQARSSTNHIHLAQHRRAQQSD 5
           A+R G RVH +Y W   +AR   N   L +   A + D
Sbjct: 154 ATRSGIRVHHLYHWAEFEARYRKNVADLQKRYGAFEYD 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,740,456
Number of Sequences: 5004
Number of extensions: 56032
Number of successful extensions: 164
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)