Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0070
         (673 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0180 - 2037656-2037858,2038517-2038579,2038909-2039782           29   3.4  
03_01_0414 + 3183292-3183735,3184547-3184969,3185435-3185535,318...    29   4.5  

>10_01_0180 - 2037656-2037858,2038517-2038579,2038909-2039782
          Length = 379

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = -2

Query: 159 RYK*RSSTNHIHLAQHPDKVEYILYTPGAAFRQDRLQTIYTWRSIAAHS 13
           R + R+ T  + L  H D V +  Y  G A +  RLQT   W  I A S
Sbjct: 84  RRRSRAETAVLRLCAHGDHVVFYGYLTGDANQVQRLQTTRHWACIDALS 132


>03_01_0414 +
           3183292-3183735,3184547-3184969,3185435-3185535,
           3186178-3187439,3187625-3187665,3187777-3187845,
           3187975-3188075,3188413-3188491,3188570-3188668,
           3188757-3188825,3188918-3188967,3189211-3189387,
           3189496-3189634
          Length = 1017

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = -2

Query: 222 YGEIKKGLYTNSLIGDPDVIDRYK 151
           YG++ KGL TNS +GD   I+R+K
Sbjct: 627 YGDLDKGL-TNSRLGDQPPIERHK 649


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,380,347
Number of Sequences: 37544
Number of extensions: 312529
Number of successful extensions: 624
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)